tmem35a (tmem35a,tmem35,LOC107724834,LOC107688707)


Basic Information

Item Value
gene id tmem35a
gene name tmem35a,tmem35,LOC107724834,LOC107688707
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16523086 ~ 16527085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683657.1
GTGTCGCCATATTTGAGCGCTGCTcccctccccccctctctcAGCATCTCCTGcaggacagcagcagcagcagcggggcGCGGAGGCGGCGGAGGGTCGGAACCGGGAGTTTGGCTCAGTCCTGACCCAGCATGGCCTCGCCGAGGACCGTCACCATCGTAGCGCTCTCCTTCGCGCTCGGCCTGTTCTTCGTGTTTATGGGGACGATTAAGCTCACCCCGCGCCTCAGTAAAGACGCCTACAGCGAGATGAAAAGGGCCTATAAGAGTTATGCTAAGGCCCTTCCAGGTCTGAAAAAGATGGGTATTACCTCTGTCCTCCTCCGCAAAATCATCGGTACCGTTGAAGTTGGATGTGGAGTGGTTCTGACACTCGTACCAGGAAAACCAAAGGATGTAGCCAACTTCCTGCTGCTGCTAGTCATGCTGGCTGTGCTCTTCTTCCACCAACTGGTCGGAGATCCTCTGAAACGCTACGCCCATGCCCTGGTTTTTGGAATTCTCCTGACCTGCCGACTGCTGATCGCACGCCAGAGCGAGGACCGACCCGAGAGGGAGGAGAGACGAGAGGAGCAGATCAATGCTCAGGAAAAGAATAAAGTCAAAGTATCTTAGCTACCATGTTTCTGACTGCAGTAGCTGCATGAAGAGGCgtgaatgtttgttttctgattAGCAGATACGATAtggtgatacaaaaaaaaagacagtagcCACAAAAAGGTTTTTCCCCATCCTTTATTCACAAAACAGTCCGtcctaaaatatgtttttcttgatttttggcCCTCTGTtaataaaactactaaaaaacaAACCATATCAGCGAATTATCTCCATCATGGCTGTTTTGAGCTCAGCTCAGCAGCAGAAATCTGACTCTGATTGCCCTTGTTAGCCCTGCTGTCATTTTGTTTAACCTaaaattatttaacaataaTCTGTGAAATGCCATTATTAATGTGACACTAATATCAGCTGTAAATGCAGATTTATTCCTACTGACTTGATGATTtgggtttttgttttcagcaCACTGTATTGAAGATCTCTATATCTATACATACATATGGACATTTATACATATGCACACATAATACGTACATAATGGTTTCATCACAAATATAATTTCAAcaaaatatcattaataaacaCGTTACACATCCTAGGAAATGTTTtgacagtgcaaaaaaaatccttctgtctttgatttctgtttttcttctagTATCAAACAGTAAGCTGTCTTTATTGTAGTCCACCCGACTATTCCAGTGCATGATAATCCAGTGGTGACGCTAAACAAGGCGAACAACTGAATAATGAAACTGTAATCTAGTGTGTTCATTTCCCTGTGGTATTTTTTGTCTGCAAGatctattgatttttttttattagtacaggtattaggttttttttactgttatttttttgtattttaaacagGCAGTTCCACCCCTGCTACCTCCATGcttgttttaccatatttatttGTCGTCACTTGTTAAGGATTGTCCAAATAAAAGATGACTTGAACCTAAA

Function

symbol description
tmem35 Predicted to be located in cytoplasmic vesicle and peroxisomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM35A (transmembrane protein 35A).
tmem35a Enables acetylcholine receptor regulator activity. Involved in chaperone-mediated protein complex assembly and positive regulation of protein localization to cell surface. Located in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane protein 35

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683657.1 True 1541 mRNA 0.43 2 16523086 16527085

Neighbor

gene id symbol gene type direction distance location
cenpi cenpi coding downstream 1257 16495356 ~ 16521829 (-)
trnae-uuc_23 NA coding downstream 379727 16143288 ~ 16143359 (-)
LOC103026525 LOC108427881 coding downstream 380507 16044178 ~ 16142579 (-)
LOC111195849 NA coding downstream 495923 16026717 ~ 16027163 (-)
btk btk coding downstream 2550057 13941252 ~ 13973029 (-)
arl13a arl13a coding upstream 8680 16535765 ~ 16545692 (-)
cstf2 cstf2,LOC107688691 coding upstream 77332 16604417 ~ 16627114 (-)
trnav-uac_1 NA coding upstream 99158 16626243 ~ 16626315 (-)
trnav-uac_2 NA coding upstream 100360 16627445 ~ 16627517 (-)
trnav-uac_3 NA coding upstream 101556 16628641 ~ 16628713 (-)
G205859 NA non-coding downstream 120006 16401078 ~ 16403080 (-)
G205814 NA non-coding downstream 175527 16343241 ~ 16347559 (-)
G205812 NA non-coding downstream 323083 16196106 ~ 16200003 (-)
G205799 NA non-coding downstream 431415 16054036 ~ 16091671 (-)
G205883 NA non-coding upstream 4426 16531511 ~ 16531867 (-)
G205916 NA non-coding upstream 75315 16602400 ~ 16653278 (-)
G205997 NA non-coding upstream 218135 16745220 ~ 16745579 (-)
G206002 NA non-coding upstream 223737 16750822 ~ 16775704 (-)
G206006 rnaseh2c non-coding upstream 255041 16782126 ~ 16785058 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 157439 16203937 ~ 16365647 (-)
G205670 NA other downstream 690992 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 955451 15407944 ~ 15567635 (-)
G205640 NA other downstream 977464 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 2544636 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 732701 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1316881 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1512590 18039675 ~ 18041939 (-)
G206575 NA other upstream 2311284 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2510609 19037694 ~ 19127726 (-)

Expression


Co-expression Network