G50878


Basic Information

Item Value
gene id G50878
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 694026 ~ 695215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57900
AATCATATTGGCCTTTAGGCACCATTTAACCCAGAATCTCATGGAACTCATCATGACACACACGCAGTGATTTTCAGAGTTGTCCACGTCATTGATTCACAGGATGATTCACAGATAGTTTCAGGTCATTAACAGGAAATGTTTCCATGGGTTTTCTACAGAGTTTCTGCTTCATCTAAAGGGGTTTTCACATAAGCAAACTATCATACGTTTAGTTCTTAAAGTCATCAGTCCTCAGGAACACACAGCGACGTCATAGGACAACAACTTTGAAGAAGAATGGAAAAAATAAAAGCTTTCAATTATACATAATACATAAATAGATTTAAATATCAAGGTAAGGCATGGCAGCCAGCCATTTAAACGGAGAATTTGTTTTGTTTTTGTTTTGTTTTTTTAAAAAAGGAAACTGTCAGTGCAAATAAAATAGGCTACCATAAGACAGGAAGCAGCCCTTACAATACATCAGTGATCAACACCAAAACCAGTACTAGAACAAACCCACTTTCCCCTCTTGGTTTGCCTTGCAATCTTAACTTTTGACAGTTTAGGCTTCTGTTCGGTCAGTTCCTTTTGGCTCTTCCACAAATGCAGAATAGATCATATTAGATCAGAATAGTTCATCATATCCAAATAGACGTGTCCTTATGATGCAGGTCACTGTCCCCAGCCAGCAATGCCAATTTCCTGCTTGTATCGGTTTGTCAGGTTGTTAGCTTGGCTTGTGAGTTTGGACAGCACCCCATGCAAGCCCTTCAGATGGAACTGCAGGAGCTGCTCCAGATCCATGTCGCTCTCCGGTTCTGTGCGCACTGTCTCCGGCGCAGGAGTGTCTTTCTTGCGCCTCTGCTCCTCTGCGCGCATGACGCCCCATTCGATGTTGTTCCGGATGGACTTGAGCTGGCTGTAATAGCTGTACATGTCTTCCTCAGCATCCCGCAGATAGCTACCCGGGTCATTGGTTAGCTTCTGCACCTCTTTCTCTTGGTCCAGCGGCACATCTCTCAGCAGACTTGGCACCATGACCGTCTGATCCATGTTGTTGACGGCGCCGATGAAGCGGTTCATTGCCGTGAAGAGAGAGTTCTTCTGGCTGAGGGGTTCGGACATCTGCATTTTGGTGGATTATGAGGGTTAATTCGAGAGTGGTTTACTCTGTATGTTTCTCTCTCGTGTTCTGCGCTTCCTTC

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57900 True 1190 lncRNA 0.44 1 694026 695215

Neighbor

gene id symbol gene type direction distance location
CI01000009_00620687_00621072 NA coding upstream 72489 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 76264 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 84651 608513 ~ 609375 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding upstream 87956 605366 ~ 606070 (+)
CI01000009_00603498_00605392 NA coding upstream 88634 603228 ~ 605392 (+)
CI01000009_00704243_00710805 NA coding downstream 8850 704065 ~ 710805 (+)
CI01000009_00719164_00724772 SRPX coding downstream 23949 719164 ~ 725051 (+)
CI01000009_00805606_00808374 NA coding downstream 109689 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 156027 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 218780 913995 ~ 916565 (+)
G50880 NA non-coding upstream 48977 644785 ~ 645049 (+)
G50883 NA non-coding upstream 57321 636474 ~ 636705 (+)
G50881 NA non-coding upstream 70069 623734 ~ 623957 (+)
G50855 NA non-coding upstream 103413 590132 ~ 590613 (+)
G50735 NA non-coding upstream 155515 538171 ~ 538511 (+)
G50902 NA non-coding downstream 2390 697605 ~ 697840 (+)
G50876 NA non-coding downstream 31858 727073 ~ 728482 (+)
G50879 NA non-coding downstream 33648 728863 ~ 729820 (+)
G50909 NA non-coding downstream 40512 735727 ~ 736025 (+)
G50911 NA non-coding downstream 46786 742001 ~ 745178 (+)
CI01000009_00094836_00095813 NA other upstream 598239 94371 ~ 97230 (+)
G50920 NA other downstream 74626 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 727632 1429873 ~ 1435328 (+)
G51122 NA other downstream 984931 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1199020 1897343 ~ 1919516 (+)
G51274 NA other downstream 1559884 2255099 ~ 2350486 (+)

Expression


Co-expression Network