sytl4 (sytl4)


Basic Information

Item Value
gene id sytl4
gene name sytl4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16747192 ~ 16773307 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683671.1
ACTGTGACGTGTTGCTGTGTGTTAGTAGAGCGAGCTGCAGCACCTGTACACAGAGAGCTGAACTTATCCCGGGATAAAGAGCTCCACACTGAGAATACTGAGCTTTACTTCACTCTGCCGGATCCTCCgggagtatagtagagtatagtggaGTATTATCAGTGTTTACTGGTTTAAGAGGAAGAGGGAGTGGAGTTATAGAGACTGGGAGCTGCGGGAGAGGGCCCTTTCCCCATGACACTGGTGCCCGTATCTGGAACGAGAAGCTCAGATCTTTGGGATGTTTGATGCTTGTGAGGTTCTGCAGAGCAACAAATCAAGgtgtAGATCCACCTCACGCTCAGCACAGAGCTTCAGCACTTGGTCCTGAAGGCGAGGGTTTGACCGGGTGAGATGGTGCAGAGCATGGAGACCATCAACGTCTCGTTCCTGACCGACTCTGAGCGGGACCTGATCCTGAACGTCCTGCGCCGGGACGAGGAGCTCCGGCACCTGGAGGAGAAGCGGGTCAAGAGGCTGAAGTTTGAGTTGTTGGAGATCAGGAGGAAGGGGGCGAAGCGCAGCAGTGGAAATTACAGTACCCGCAGCTGTGGGCGCTGCCAGCAGCCCATGGGCCGCTTGGGCTCCCGCACCAACCAGTGCCCGGTGTGCAAACACGAGGTGTGCCAGAACTGTCACGCCGTCCGACCCAACCGAGCctgggtgtgcagtgtgtgtgccaAAGAGGCAGAtctgaagaagagcacaggcGATTGGTTCTACGATCAGAGGGTTAACCGCTTTTCCACAGCTCCGGGACGTGACATAGTGAGGACCTCCCTCAGGAAGAGGCCTCCAACTAAGAAGCGTGAAACTACAGGACAGGTTCTGCTGAACAGTACAGAGCTGAACTCCAGCCAGAGTTTACCCGTTCCCCGACCCAGACTGAAGGATCTCGCGCAGGGAAACACAACCTCATCCAGTGAGAACCTGCAGCGCAGTGATACGGACTCAGCCGAGAGAACCAGCCTGAGCAGCAGCCGGGCCGACACCGACTCCCTGCGCAGCACTCCGTCCCTGCAGAGgaaagAAGAGCTGGTGATTAGGTCCAGTCCAGCAGGTTCTACTGTCAGAGTGACTGTTCCCAGTCCTGCTCGCTCTGCTGCTCCAACTCCAGAACGGGCCCCGACTCCAGAACGGGCCCCGACTCCAGAACGGGCCCCGACTCCAGAACGGGCCCCGACTCCCACTAAAACACACAGTCCCTCAGGGTCCATCTCTGGTACTGAGACTtcttCTTTAGTTCATCACATTAATCCGTGCTCAGAGGACTTCAGTGACGTTGATGGAATTTTTAAGAAGAGTGTGAGAAGAGTTCACAAACTGTCAGATTTTAAGCCGACTTCAGTGACTGACCTGCGTAAAGATGCAGAAGAGGAGACTACAGGTTCTATGGGAGACAGAAGCAAGTCAGTTCCAGGTCTCAATGTggatgaagatgaggaggatgaagatATTGATAATCTGGTGATCATGCACAGGCAGAGTGTGGGTAACAGTGCCGCCAGTCTCCGCAGCTCCAGGAGCACTCTGGGTAGTATGATGAGTGTGTACAGCGAGGCGGGGGATTATGATATCGTGGACGTGAGCGGAGAGATCGTCTTCTCTCTGCACTACGATGAAACGGCTCAGAGTCTGGCGGTGATGGTGAAAGAGTGCCGGGGGCTGGCGTACGCCGACGCCGCTAAAAAGAAGTGCAACCCATACGTCAAGAGCTACCTTCTCCCGGATAAGTCCCGCCAGAGCAAGAAGAAAACTGCCACCAAGAGCAAGACCATCAACCCCACCTACAACGAGACCTTAAAGTACTCCATCAGCCGCTCCCAGCTGATGACCCGAACCCTGCAGCTCTCAGTCTGGCACTATGACCGTTTCGGACGCAACGCTTTCCTTGGAGAGGTGCAGCTGCCGCTGGACTGCCACGACATCGACTCGGCCCATGAAGAGTGTGTGATCCTCAGGGGGAAGGCCGCTGGCTCTTTGGCCCCCTCTGCGTTTGCCCAGTATAAAGGAGAACTGGTGATTTCCCTGAAGTACGTCTCGGAGAAGAAAGCTCCTTCAGAAAAGCAGAAAGCAAAAAAGGCTAAAGCTGAGAGTGGTGGAGAGCTGCATGTGTTAATCAAGGAGGCGAAGAACCTCTCAGCTATGAAAGCTGGAGGAACATCTGATTCCTTCGTTAAAGGATACTTACTGCCATCCAAGGGTAAGTCCACCAAGAAGAAGACTCAGGTGGTGAAGAAGACTCTGAACCCGCACTACGACCACACCTTCATCTACAAAGACCTGAGTCTGGACCAGCTGAGGGGCGTGTGTTTAGAGCTCACTGTGTGGGACAGAGAGGCCATGTCCAGCAACGACTTCCTGGGCGGAGTCCGCCTGAGCTCAGGGGCAGCGCATCTGAAGGAGGGGAAGCAGGAGTGGGTGGCTGATTCTACAGGAGAGGAAGTGTCTGTATGGGAGAAGATGATGCAGTTCCCGGACTCGTGGGCAGAGGGCACACTGCCACTGCGCTCCTCCATGGGCAAGAAGGGCAAATAAGGACAATCGCCTCACTGCtgaaatcaattaatcaacacagcagcagcacactACACTCCGGCAGATACGCAATATTATACGAATATAACAATAAGAGAAACGTGTATAATACAGattttatgtttgtatgtatgttcaAGAAAAAAGTACGTTATTGCATTTTACTCcattttaaagccatttttttAACCAAAGAAATAGATGGGGAACTGACTTTTTTTAGGGATCAGTTTGGCTGCAGCTGAATGTATGTATAGGTAATAAATTCTATTTGcaaatgtttttcttaaaaatgaCAGAACAAAATTGCTGAttgctgtttttacatttattttattatgtttataatgttttactgaCATTCTTCCCATTCACTGCTCTACAGTAGCATAAAAAAATCCAACACAATCTGTATAATATTGAGATGATTATGATTATTGACTGTGACCACTTGGGGCACggtttctatttttaatttcaaAGCTATATACAAAgcacttaatttaataaatattaaattatatttaccaCTGTCCCTGCTGTCTGTAGTgtgtacaaaatataaaaatgtaaaaaatactggAGATTATGAACACTTGTGtaaagatttaaataaaaaaaggaacaaatgAAAGTC

Function

symbol description
sytl4 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL4 (synaptotagmin like 4).

NR:

description
synaptotagmin-like protein 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683671.1 True 3214 mRNA 0.50 18 16747192 16773307

Neighbor

gene id symbol gene type direction distance location
tspan6 tspan6 coding downstream 20853 16720472 ~ 16726339 (-)
LOC103041961 LOC108427811 coding downstream 31818 16713032 ~ 16715374 (-)
trnav-uac_4 NA coding downstream 116141 16630979 ~ 16631051 (-)
trnav-aac_55 NA coding downstream 117625 16629501 ~ 16629567 (-)
trnav-uac_3 NA coding downstream 118479 16628641 ~ 16628713 (-)
trmt12 NA coding upstream 3165 16776472 ~ 16781235 (-)
LOC103042614 LOC106936709 coding upstream 15194 16788501 ~ 16792530 (-)
clint1 LOC108427862 coding upstream 30214 16803521 ~ 16835499 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding upstream 180517 16953824 ~ 17199398 (-)
LOC103024939 ebf1,ebf1a coding upstream 426166 17199473 ~ 17246825 (-)
G205997 NA non-coding downstream 1613 16745220 ~ 16745579 (-)
G205916 NA non-coding downstream 93914 16602400 ~ 16653278 (-)
G205883 NA non-coding downstream 215325 16531511 ~ 16531867 (-)
G205859 NA non-coding downstream 344112 16401078 ~ 16403080 (-)
G205814 NA non-coding downstream 399633 16343241 ~ 16347559 (-)
G206006 rnaseh2c non-coding upstream 8819 16782126 ~ 16785058 (-)
G206004 NA non-coding upstream 13370 16786677 ~ 16787388 (-)
G206007 NA non-coding upstream 19749 16793056 ~ 16798716 (-)
G206000 NA non-coding upstream 28629 16801936 ~ 16802937 (-)
G206017 NA non-coding upstream 156481 16929788 ~ 16930144 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 381545 16203937 ~ 16365647 (-)
G205670 NA other downstream 915098 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1179557 15407944 ~ 15567635 (-)
G205640 NA other downstream 1201570 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 2768742 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 486479 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1070659 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1266368 18039675 ~ 18041939 (-)
G206575 NA other upstream 2065062 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2264387 19037694 ~ 19127726 (-)

Expression


Co-expression Network