LOC103024939 (ebf1,ebf1a)


Basic Information

Item Value
gene id LOC103024939
gene name ebf1,ebf1a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17199473 ~ 17246825 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683673.1
TTGCTTGTGTTTCGTTCCCACAGCTAGTCACATCGGATTCCTCTGGGAAAGAGCGCAAATCGGTCCCGTTTGAACACGGGGAACAGCGCGCGCGGGATCCGTCCGCCGCCACGAGGGTCTCCACCTCTCCCTTTGCCTGATTTCAATATCGCTCATTGATTTTGATTTGATCAGAgcataaacaaaacagaaaagagGGGAAAGGCaaataaagaggaaaagaggaagGTTGTGGATAATGACATCTGATCTATAGCGCGCCGCCGGAGCCGCCGCTGATGATCATCCAGTTTTTCTTAAAGTgacattagatttttttttatctcttcttttttcGCTCACGAGCCATCAGTGAAGATCTGAAGATCTCACCGGGTATCTTATCTCTCACGCGTCTCCCAAACCTTGTGCTTGACAGCGCGAGATTGCTTCCACGCGCtacttgtttctttttttgttttgattttattttccttttcattacatttgagtaattttttgtacatttttaagtggactaGAGAAAGCCAAGGAACACTCCGAGACTCCATCTGACCTGTCCAGACTTCAGCCTCGATTTTTACGGAGAGATAATTTTTTTGTGGAGCGATCAGATTTTTGCCAGAtaggacagaaagagaaaaagagagacggGGACTTGGGGAATAAATCtggataaagaaaaacaataaaaaggaaaagaagaagaagaaaaataagtgACCTGGGAGAATAGACAAAAGTCCGCGTGCTCATGTTCGGGATCCAGGAGAGCATTCAGAGGAGCGGGAGTAGCATGAAGGAGGAGCCGATGGGCGGCGGCATGAACGCGGTCAGGACGTGGATGCAGGGCGCCGGAGTGCTGGACGCGGCCACCGCCGCGCAGAGTGGAGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCGTCCAACCTGCGCAAATCCAACTTCTTCCACTTCGTGCTGGCTCTGTACGACAGGCAGGGGCAGCCCGTGGAGATCGAGAGGACGTCGTTCGTGGGATTTGTGGAGAAAGAAAAGgaACCCACCGGAGAAAAGACAAACAATGGGATTCATTACAAACTACAGCTCCTCTACAGCAACGGTATCAGAACAGAACAAGATTTTTATGTACGCTTGATCGACTCCATGACCAAACAGgcTATCATTTACGAAGGTCAGGACAAGAATCCGGAGATGTGCCGAGTTCTGCTAACACACGAGATCATGTGCAGccGCTGCTGTGACAAGAAGAGTTGTGGCAACCGTAACGAAACACCTTCCGACCCCGTCATCATAGACAGGTAAGAGGCGGATTAACACACCCTTcatttgtgcgtgt

Function

symbol description
ebf1a Is expressed in nervous system and neural tube. Orthologous to human EBF1 (EBF transcription factor 1).
ebf1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: transcription factor COE1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683673.1 True 1346 mRNA 0.48 6 17199473 17246825

Neighbor

gene id symbol gene type direction distance location
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding downstream 75 16953824 ~ 17199398 (-)
clint1 LOC108427862 coding downstream 363974 16803521 ~ 16835499 (-)
LOC103042614 LOC106936709 coding downstream 406943 16788501 ~ 16792530 (-)
trmt12 NA coding downstream 418238 16776472 ~ 16781235 (-)
sytl4 sytl4 coding downstream 426166 16747192 ~ 16773307 (-)
LOC103041682 NA coding upstream 65108 17311933 ~ 17319469 (-)
sh3tc2 sh3tc2 coding upstream 313434 17560259 ~ 17597003 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding upstream 606847 17853672 ~ 17865149 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding upstream 639467 17886292 ~ 17890574 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding upstream 645043 17891868 ~ 17898561 (-)
G206099 NA non-coding downstream 48424 17150509 ~ 17151049 (-)
G206029 NA non-coding downstream 203014 16994519 ~ 16996459 (-)
G206018 NA non-coding downstream 268122 16930762 ~ 16931351 (-)
G206017 NA non-coding downstream 269329 16929788 ~ 16930144 (-)
G206000 NA non-coding downstream 396536 16801936 ~ 16802937 (-)
G206142 NA non-coding upstream 31994 17278819 ~ 17279196 (-)
G206149 NA non-coding upstream 90116 17336941 ~ 17337141 (-)
G206154 NA non-coding upstream 109288 17356113 ~ 17356466 (-)
G206164 NA non-coding upstream 174103 17420928 ~ 17421193 (-)
G206172 NA non-coding upstream 203507 17450332 ~ 17450645 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 833826 16203937 ~ 16365647 (-)
G205670 NA other downstream 1367379 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1631838 15407944 ~ 15567635 (-)
G205640 NA other downstream 1653851 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 3221023 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 12961 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 597141 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 792850 18039675 ~ 18041939 (-)
G206575 NA other upstream 1591544 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 1790869 19037694 ~ 19127726 (-)

Expression


Co-expression Network