ergic1 (ergic1,LOC107679115,LOC107660430)


Basic Information

Item Value
gene id ergic1
gene name ergic1,LOC107679115,LOC107660430
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17959960 ~ 17984069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683687.1
AAAAAGAATCAGCGTTAGCCGCTTCTTCACCCAATAGGATTGTGCAAAGCGTCCTAAGAGGACGTCACGTCCGGTCAGTACTGCCGCCGGTAGGTGAAGCTGCGGCTCCGGTTCTCCGTTTTCCGCTTCAGCAGCGCCGCCGGTGAACCGACAGCATGACTTTCGATGTGCGGAGATTCGATATCTACAGGAAGGTGCCCAAAGACCTCACCCAGCCCACCTACACCGGAGCTTTCATCTCCATCTGCTGCTGCGTCTTCatgctcttcctcttcctctccgaGCTGACGGGATTCATCGCCACAGAAATAGTTAATGAGCTCTATGTTGATGATCCAGATAAAGACAGTGGAGGGAAGATTGAAGTGAGTTTAAACATCAGTTTGCCAAACTTACACTGTGATTtgGTGGGTTTGGATATTCAGGATGAGATGGGGCGTCATGAGGTCGGTCATATTGATAACTCTATGAAGGTGCCGCTGAACAGTGGATTCGGCTGCCGCTTCGAGGGAGAATTCACTATTAATAAAgTTCCTGGAAATTTCCACGTATCGACGCACAGTGCGACGGCGCAGCCGCAGAATCCTGATATGACCCACATCATTCATAAACTCGCCTTCGGAGAGAAGCTTCAGGTTCAGCACGTTCAGGGAGCTTTCAACGCCCTCGGGGGAGCCGACCGCCTGCAGTCTAACGctctggCGTCTCATGATTATATTCTGAAGATTGTTCCTACAGTCTATGAAGATTTATCAGGAAAGCAGAGGTTTTCCTATCAGTACACCGTGGCCAATAAGGAGTACGTGGCCTACAGTCACACGGGACGGATCATCCCCGCCATCTGGTTCCGATACGATCTGAGTCCAATCACAGTGAAGTACACCGAGAGGAGACAGCCAATCTACCGCTTCATTACAACCATCTGTGCGATTATTGGTGGGACGTTTACCGTGGCCGGGATTATTGACTCCTGTATATTTACAGCCTCTGAGGCCTGGAAGAAAATCCAGATCGGAAAAATGTCTTGATTTCACCTCGTTTACCGTATTTATACCACAGTGACTCTCCACATTTACACTGAACCAAGTTTCCCCTTTAATGTTCCATTCCATCGTTTCACACGACCTGCTGGACCTCCGAGACTCTTCAGGTCTAAACTAAAAAGTTACTGAAATGAAGAACAGAATGATTTTCCACTTTGTTGCCATATTTTTGTACATGTTATGAAAACGTGTTTTTGTAAATTTCTCAGTATGAGCGTTTCTGTTCAGCTCTGAatgttaagtgtatttaaaacacaaattcTATGTATTTCTTtcacaaaaagtgtttttttcagaaTCTGCCAGTATATTAAGACCTGaagattaaaacataaaacttaAACAGGACACATATAGATATTAAGTCATCATGACTGTTACTCGGGTTCTGTAAATTAACCAGATTACAGTAAACAAAGAGGATTTTAATCAGTGGAAACGCTGAACTGTTTAAAGCATTGATGACTTTACTGTTCACTTGGCTGCAGAATTGGCTTGAAGTGccttaaaagtgttttaaaagttcatGAAGATAAAATTACTCAAGAGCTTATAGAATATTATAGAGGGTGGCTCCAGCTTGGcggtttttttttctcgttcTTTCTTTTATGGTTACTGGTGTTTAGTTTTTTCTGTTGGGAATGAGTTATTATGGGAAAGCTCTTATTACCAAAGCGTTTCTGAATGAaggtttttttatgtgtattttactttgtaaagatgttttttttttgcgctgtAGCTGTTTAATTTCTGCTCAGTTCATACAGTTTAAAAGTTGCTTTTTTAGatgtatttagtttagtttcctGCCTGTTTTACCCTCAGCCCAAATCACTGTTACTGACTCTGAAGGTTCCAGCAGAACTTTTCCTTCTGTTCTGGTTAAATATCAGGTTCATGTTTTGAACGAGTGCCGCTGGTTAAGCTGCTTAACAcagaaaacaatttaaattcagtgtttttaaccaGAAGCCTGAAACACTTGAAGGTACAAACAttcaaaactaaaactaaacagcTGAGACAGTTCAGTCTGATTTGTTGGTAAAATCTGTTGCCCTGTGGATTTTCGCCCGGGTTTCTGCCACTGTTTCATTTACTCTGATCAGATAAAATTACACAAACATGTTTCTAATTTCTGTTTGGTCATTCCTGTTTCTCCTCCACTTCTTTTTATCACTTTCTGATTCAAGTGAATCGAGCAAGAACATATAAAATCAACAGAaattaaaatccatttttactgctgtg
>XM_022683688.1
AAAAAGAATCAGCGTTAGCCGCTTCTTCACCCAATAGGATTGTGCAAAGCGTCCTAAGAGGACGTCACGTCCGGTCAGTACTGCCGCCGGTAGGTGAAGCTGCGGCTCCGGTTCTCCGTTTTCCGCTTCAGCAGCGCCGCCGGTGAACCGACAGCATGACTTTCGATGTGCGGAGTCTCCATCTGCTGCTGCGTCTTCatgctcttcctcttcctctccgaGCTGACGGGATTCATCGCCACAGAAATAGTTAATGAGCTCTATGTTGATGATCCAGATAAAGACAGTGGAGGGAAGATTGAAGTGAGTTTAAACATCAGTTTGCCAAACTTACACTGTGATTtgGTGGGTTTGGATATTCAGGATGAGATGGGGCGTCATGAGGTCGGTCATATTGATAACTCTATGAAGGTGCCGCTGAACAGTGGATTCGGCTGCCGCTTCGAGGGAGAATTCACTATTAATAAAgTTCCTGGAAATTTCCACGTATCGACGCACAGTGCGACGGCGCAGCCGCAGAATCCTGATATGACCCACATCATTCATAAACTCGCCTTCGGAGAGAAGCTTCAGGTTCAGCACGTTCAGGGAGCTTTCAACGCCCTCGGGGGAGCCGACCGCCTGCAGTCTAACGctctggCGTCTCATGATTATATTCTGAAGATTGTTCCTACAGTCTATGAAGATTTATCAGGAAAGCAGAGGTTTTCCTATCAGTACACCGTGGCCAATAAGGAGTACGTGGCCTACAGTCACACGGGACGGATCATCCCCGCCATCTGGTTCCGATACGATCTGAGTCCAATCACAGTGAAGTACACCGAGAGGAGACAGCCAATCTACCGCTTCATTACAACCATCTGTGCGATTATTGGTGGGACGTTTACCGTGGCCGGGATTATTGACTCCTGTATATTTACAGCCTCTGAGGCCTGGAAGAAAATCCAGATCGGAAAAATGTCTTGATTTCACCTCGTTTACCGTATTTATACCACAGTGACTCTCCACATTTACACTGAACCAAGTTTCCCCTTTAATGTTCCATTCCATCGTTTCACACGACCTGCTGGACCTCCGAGACTCTTCAGGTCTAAACTAAAAAGTTACTGAAATGAAGAACAGAATGATTTTCCACTTTGTTGCCATATTTTTGTACATGTTATGAAAACGTGTTTTTGTAAATTTCTCAGTATGAGCGTTTCTGTTCAGCTCTGAatgttaagtgtatttaaaacacaaattcTATGTATTTCTTtcacaaaaagtgtttttttcagaaTCTGCCAGTATATTAAGACCTGaagattaaaacataaaacttaAACAGGACACATATAGATATTAAGTCATCATGACTGTTACTCGGGTTCTGTAAATTAACCAGATTACAGTAAACAAAGAGGATTTTAATCAGTGGAAACGCTGAACTGTTTAAAGCATTGATGACTTTACTGTTCACTTGGCTGCAGAATTGGCTTGAAGTGccttaaaagtgttttaaaagttcatGAAGATAAAATTACTCAAGAGCTTATAGAATATTATAGAGGGTGGCTCCAGCTTGGcggtttttttttctcgttcTTTCTTTTATGGTTACTGGTGTTTAGTTTTTTCTGTTGGGAATGAGTTATTATGGGAAAGCTCTTATTACCAAAGCGTTTCTGAATGAaggtttttttatgtgtattttactttgtaaagatgttttttttttgcgctgtAGCTGTTTAATTTCTGCTCAGTTCATACAGTTTAAAAGTTGCTTTTTTAGatgtatttagtttagtttcctGCCTGTTTTACCCTCAGCCCAAATCACTGTTACTGACTCTGAAGGTTCCAGCAGAACTTTTCCTTCTGTTCTGGTTAAATATCAGGTTCATGTTTTGAACGAGTGCCGCTGGTTAAGCTGCTTAACAcagaaaacaatttaaattcagtgtttttaaccaGAAGCCTGAAACACTTGAAGGTACAAACAttcaaaactaaaactaaacagcTGAGACAGTTCAGTCTGATTTGTTGGTAAAATCTGTTGCCCTGTGGATTTTCGCCCGGGTTTCTGCCACTGTTTCATTTACTCTGATCAGATAAAATTACACAAACATGTTTCTAATTTCTGTTTGGTCATTCCTGTTTCTCCTCCACTTCTTTTTATCACTTTCTGATTCAAGTGAATCGAGCAAGAACATATAAAATCAACAGAaattaaaatccatttttactgctgtg

Function

symbol description
ergic1 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in neurogenic-type arthrogryposis multiplex congenita-2. Orthologous to human ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1).

NR:

description
PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20365 ERGIC1; endoplasmic reticulum-Golgi intermediate compartment protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683687.1 True 2300 mRNA 0.42 10 17959960 17984069
XM_022683688.1 False 2238 mRNA 0.41 9 17959960 17984069

Neighbor

gene id symbol gene type direction distance location
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding downstream 61399 17891868 ~ 17898561 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding downstream 69386 17886292 ~ 17890574 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding downstream 94811 17853672 ~ 17865149 (-)
sh3tc2 sh3tc2 coding downstream 362957 17560259 ~ 17597003 (-)
LOC103041682 NA coding downstream 640491 17311933 ~ 17319469 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding upstream 91986 18076055 ~ 18079482 (-)
ccdc142 NA coding upstream 181919 18165988 ~ 18176115 (-)
slbp NA coding upstream 192638 18176707 ~ 18180522 (-)
LOC103044938 NA coding upstream 207722 18191791 ~ 18208886 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding upstream 296564 18280633 ~ 18282899 (-)
G206271 LOC108436176 non-coding downstream 57396 17901879 ~ 17902564 (-)
G206275 NA non-coding downstream 116417 17843285 ~ 17843543 (-)
G206218 NA non-coding downstream 381276 17578285 ~ 17578684 (-)
G206203 NA non-coding downstream 407819 17455279 ~ 17552141 (-)
G206172 NA non-coding downstream 509315 17450332 ~ 17450645 (-)
G206348 NA non-coding upstream 50071 18034140 ~ 18039149 (-)
LOC111195818 NA non-coding upstream 129649 18113718 ~ 18122487 (-)
LOC103029928 NA non-coding upstream 199358 18183427 ~ 18186787 (-)
G206434 NA non-coding upstream 286394 18270463 ~ 18274321 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding upstream 292188 18276257 ~ 18278541 (-)
LOC103033759 NA other downstream 107769 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 658967 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1594313 16203937 ~ 16365647 (-)
G205670 NA other downstream 2127866 15831650 ~ 15832094 (-)
G205640 NA other downstream 2414338 15543917 ~ 15545622 (-)
LOC111195732 NA other upstream 55606 18039675 ~ 18041939 (-)
G206575 NA other upstream 854300 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 1053625 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1940962 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1973408 19957477 ~ 19968031 (-)

Expression


Co-expression Network