ccdc142


Basic Information

Item Value
gene id ccdc142
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18165988 ~ 18176115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683694.1
tgtatagagggGGGATTAGCGAGGCTGCGCTTAAAATCAGGAGAGATGAGAGAAGTGAATTAGCTAAGCTGTGGGCTGAGATTAGGATGGCTCAGATGTCTGCTAACCAGCAGGAGGGGCAGAGTGAACCAAACAAGCCTCCtcacagcactgctgctgctgcagACAGAGTGGAGCAGTCTGCTGTGACTGACAGCTCTGAGCTCCTGGCTTCTGAAGATGAACAGAGAAAGCCAATCGTCTGTCCAGAAATACTGTCTGAGGAGTATCTTTCAAGGGACAAGTATGATGGTTCTCGATACCACTGCCCGTTTACGAAGTCCCTTCAGAAGGCAGAGGCTCTGTTCCGGATACGCTTCAACCCCAGTCTGAAGTGGCTCCTGAGGCAGAAGGGAGATGGCAGCTGCTGGGATTACGAAAATGAGGATAATTTTGTGGCCTGTCAGAATCTGACCTCCCGCTCCTCCATGCGCCTCCAGCGCCTCGAGCACAACCTGCTGAGCCTCAGTTCTCAGTGCCGGGTGCTGCGCGGCGTGAGGGGCTGCTTGCAGGGATGCGTTACGGGGCTTTCTGCTTCTGGAGAGGCGGATTTTTACCACCATCCTCAGGCAGCAGCTTTCAGCCAGCACTACGTTCAGCTTCAGCacctgctggagcagcgggCTCAGCTCCTGTTCCTCCACGAGTTCGGCCGCAGGTCTCGCGTGGCTAGCTGCTTCGTGACGCGGTTGGGTGATGTCCTGGAAAGAGCCCGTCTCTTGCTGTTGGCCGGTGGAGGAGGTCCGGCTGCAGGGCTGCCCAGCAGCTCTACCTGGAACCTGGGGCTTCAGGCTATGTGTGAGGAGCTGCAGCTTCACGTGAGCCACTGGGACCTGCTGTGCGCGAGAGCACGCTCTGACCTTTTCTTGCGACCCGTTCTTTTTAACCACTCTGAGATGCTCGGCTCCATGAGGAAGGCCCTGTCGATGCTGGGTCTACAGGCTTTGCTGTTGATTGAGCGCTGCATCCACACGGCCCTCCTGGCTCTCGCTGCTGCTCAGCTCGGACGGGTTCCCAGAGATGCTTTAGAGGACTTGGTGGCTGCTGTAGAGCTTTATAATCATATCGTGGCTCAGAAAAAAGCGACAACCTGGAGTTCGCAGGTTTTATTCCGCTCCAACTGGTCTCAAATTAGTCCAGGCTTTTCCAGGAACAGTGCCGAACCTGCTCCGTTCCCGGTGGTCCAGCTAATGAAGATTTTGGCTCGGAGGCGAGCGCAGATCGCATCAGAGCAGCTCTATTACTGGACATCTCAACAAACAGACCTCATCTCTCTATCAGGGCAGCCCAGCACTGAGTGGAGCGACTCTGGACCCTCAGATCCTCCTCAGCCTTCATCATTTACCTCAGCCTCGATCACAGCCGAGAATTCACCCGACCCCCTCTCAGACGATCCTCCAAAAAAGCACCTCCACACTTCCTGGTCTTCCAATCTGCCCCTCTCCACGTTTGTCCGCCGGGACCGAGAGTATCTGGAGACTCTTTTTCAGGTCCTGGTGTCCTCCACAGACCTGCTGGCTCCTCATATTCCCAAAAGACCTCCGTTAGACAGAGCTCACACTGCAGACGGAGCGATGGACAGTAGCCGCAGGGCCAGCGAAGGAGAGGAAAAGCTTCCAAACAGAGCCAAAACCGCCTCCAGCAGACACAAAGCCATTCAGTGGATGGACCTGAGCAAGTCTGACGCCTGTGTGGAGCTTTTCTCTCAGTACAGAGACATGCTGTGGAACCAGTTTAACAGATCTGTTATAAATTGCTTTTATTACCAGCCTCACAGTGACAGGCTGGGTAGTGTGAACCAGTGGAATTATCAGATGATGTTCCTCCTGGGGAAGTGGCTGCAGCATGCCTGTAAAGAAGAACTCGTTCCAGCAGAATCCAAGGATGTTTTGAATAAATTCTGCTTCCATATTTTATCTACTGCTGCCTTCATGCGTTGGGATGATAtgatgTGTGCGTCTCTGGGTTTGGGGGTGAATGATAAGTGTTTACCTCGGCCTGTGCCGGAGAACTCTGCGGTCAGAACCGCCACCATGGACCTCACCATCCAGCTGTTCCCTCCTCTGTTCTGTGTTCTCCACCTGCTGCAAACCCCAGACCCAAACTCAGTAGGTGAGGAGGAATCGGGCTGTAGTGTGTATTATCTGAAGTTGCTGCGCAGAGCTGTAGCCACTGTTCAGTCCTCTACGTTCTGGGTTATGAGTAAAGCCTATCAGTTTCTGGCTGCGTGGGCTCTCAATAAGTTCCTGCTGGTAACACAAGGAGATCTGAAGGTTCTGAGGAGGACAGTAGAGGTTTTGGCTCAGCAGCTGGATGTTGTGGGTGACGGTGCTGAACATCCTCTGATTGTCCAACACAACCTCCAGCTAACTCGAGCagtttcacaactacagGCTTTCTCTGAGCTCGTCTTAAGGATCTTTTCTATGGACTGCAAGAAAATGTCTGTGGAGATTTTTGAGCAAACCATGCCGTCAGCAAAACACTGGAGAGTGAACTATAAATCAGAATTACCCAGCAGTCCGAGTGAGTACGCAGCGTCTGCAGCTCAGAGTGTGATTGGTCAGGTGATTGAAGGAGTTCAGCCTCTTCCAGATGAAGCTCGAATTCCAGCTCTTACTGAAGCCATGACCGCTTTCATGGAGGCCTGGATGGAGCACATCCTCAAACAGAAGATCAAGTTCagTATTCAGGGAGCTCTGCAGCTGAAGCAGGATTTTGACCTGATCCGAGATCTGATTCGTTCAGAGGAGTACAGCCTGTCGGAGGAGCTGCACCACAGACTGCTGTCTCTGAGGGTTTTTCAGCAGGTGGACGGAGCTATAGTCTGTCTGCTGCAGCAGCCTATGGCCAAAACATACGTTCTGTCTCGAGGATGGGATCCCTTCAGACGATGCTGTCCAAAGCGAGGTCAGGTAGTGGACCAGGCAGCCGGCAGCCTCAATAACCTGGAAACTATGGACATCCAGCCAATGTGCCACCAGGCCCTGACCCAGGCGGAAGGCTCTGTGACCCCGGAGCTGCTCTCCACGGCTCCACCTGAGTCCTACCTGGCTGTGGCCCAACAGGAGTGGCTGGACCTGCGAATTCACAGCGGCTCTCGCTGGAGACTCCCCGGCTTCCAGTGTTTCTCTAAATCTGAGTCCTGAATCACTGACCTGAAAACACAGAGATCTGGATTAGTATTACATCACCCAGAAAACATTTCAGAGGAGAACGAGGGACTGAACTTCCTTTCAGATTTACCTGGAAATGGAAATgcctttaaaaaagcaattttaaGAACATTCATCAAATCTCAGATAATGCCTGGACCgtttaaatgtgattaaaacgATGAGATGAAATAGTTTATCTAGTAAACATGTGGTACAGTACATGTTCTGGTTAAGAAGGGTCCTGCAGTAAATAGATATTATTAGGAAATGTTTCCGCATTAATCACCTAATAACCTCTTCATGGAAATCCACCCAGGCTCTTGGTTTAATTCCAACCTAAACCTGAAACACCTCCTCATCCAGTTGATCAAGAGTGTCAATCCTCTGTCTCAGACTGAGAGCTTCTGTAGCGTGCCAGACGCTTAATAGTGCAGGAAGTGTGTTCACACTGGGCACAGCATGCCAGGGATTTAGAGCACTTTAATCCCAGGTGAGACGCTGCACACTGTTTGCTCTCAGCAGAAATACACTGCAGTACAGGTTTAGATTTAGTGTCTAGATCTGGCCCAAAAAATGCCCCCAGACCCGTCCCGAGCCCGAGTCCAATCCGCTCCAGacactgtcattatgagcccgagcctgatttaaaccccacatttttttgtaattagtgtgttaaaactgagctttttacaaatcttttcaggctgtttgaatgagctaaatctgttcagaatgttaatgttaaataacattgcaacactgaagaagcacagaCCTATTATCTTAATAAacataagaaaaatgtttaataataacagctaaATGCAGCGCTGCAAATCAGATGCGGACAAGtggtgattataacattctaacttgtgcaagttttatttaaaaacagtttgatttgttaattTGCTATTTTGCGTTTATCACGCCAtagcattatataaaataactaatagcCTTAAAAACAGACACCTACTatacagaccattttcttgaaaataagggaaaaatagctacttttaataataatatttttgtaaattttaatgCCTTTTTGAACAAGAATGTGAAACCAATTGAGAACTGTTACTACGTGTGCAGCTGgtatttttatatcatttattttgttcattatttcaatattttagtatgatagatatttttttcatatattttattttatcaatgaCTTgcatttaaatgttacttatttTATCTAcatgtttactgtatttattccaGAGCATACATAAAAAAAGCTGCATGTATGAAGATCCTGAGCATTGgataaaaaagaacacaagatttttgaatgtatttatgtatttatataatcctgaaacagatattataagagTTCTTGTATCTTACCTTCTAATTTCTTAATGTACATTCCACCATATTTTtgaccaaataaacattttgtttcgtataaaaagaaa

Function

NR:

description
coiled-coil domain-containing protein 142

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683694.1 True 4648 mRNA 0.47 13 18165988 18176115

Neighbor

gene id symbol gene type direction distance location
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 86506 18076055 ~ 18079482 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding downstream 181919 17959960 ~ 17984069 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding downstream 267427 17891868 ~ 17898561 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding downstream 275414 17886292 ~ 17890574 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding downstream 300839 17853672 ~ 17865149 (-)
slbp NA coding upstream 592 18176707 ~ 18180522 (-)
LOC103044938 NA coding upstream 15676 18191791 ~ 18208886 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding upstream 104518 18280633 ~ 18282899 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 161577 18337692 ~ 18343003 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding upstream 180874 18356989 ~ 18370024 (-)
LOC111195818 NA non-coding downstream 43501 18113718 ~ 18122487 (-)
G206348 NA non-coding downstream 126839 18034140 ~ 18039149 (-)
G206271 LOC108436176 non-coding downstream 263424 17901879 ~ 17902564 (-)
G206275 NA non-coding downstream 322445 17843285 ~ 17843543 (-)
G206218 NA non-coding downstream 587304 17578285 ~ 17578684 (-)
LOC103029928 NA non-coding upstream 7312 18183427 ~ 18186787 (-)
G206434 NA non-coding upstream 94348 18270463 ~ 18274321 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding upstream 100142 18276257 ~ 18278541 (-)
G206443 NA non-coding upstream 103696 18279811 ~ 18280130 (-)
G206444 nsdhl non-coding upstream 107778 18283893 ~ 18286260 (-)
LOC111195732 NA other downstream 124049 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 313797 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 864995 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1800341 16203937 ~ 16365647 (-)
G205670 NA other downstream 2333894 15831650 ~ 15832094 (-)
G206575 NA other upstream 662254 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 861579 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1748916 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1781362 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1930982 20107097 ~ 20274905 (-)

Expression


Co-expression Network