LOC103044938


Basic Information

Item Value
gene id LOC103044938
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18191791 ~ 18208886 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683695.1
TGAGAGGAGGAGCAGGGCGGCTCTCTGCGCTTAAACTGGATAAAACTGACGAATTTAAGGATTTACTTGTAAacactgactgagaaaatgtgtGGAATTTCCCCAGCTACAATATAAGCATCGGAAACTTAATAGGAGACAGCCTCGGCGAGAGAGGGCCCTGTAGGAGTTGGCACAAGGTCAGTGGCTGCTTTGTGAGCCCCTTTGGCCGCACCTGACCTCCATGCACATCCGCCTCTGCGTGGACCCTAAAGAGTCTCGGGCCTTTCATGGAACGCCGCTTGGCGCTGTCGGCAGCCAGGCATCGGAAGTGACGGCCATGGAGGACGCTCCTGTCCCGCCGCCACCGATCCcgcctccacctcctcctcctccaccaccccCGCCGACCCCGGCCACCTCCCTCGGCCGCCTGGACTCCGCCGTGCGCCGCCAGCGGCTTCGCAACCTCAACTGGGAGCGGATCCCCAAGGAGCGAGTGGAAGGATGTAAGAACGTATGGAGCTtctctctggctgctgatgacgACTTCCCCATTGACCTGCACTCTCTGAATGAACTTTTCGGCCAGAAGGAGGCACGCAAGACTGAGCGAGGGGACAGCTTCAGACGCAGCCTGCGACGCTGCAGGTCTCCACAAGAAGCCTGTGCTGACAAGGTTTCCATACTGGACTCAAAGCGCAGCATGAACGTTGGGATATTTCTACGACAGTTCAAAACCGCAGCCAAGGAGATTGTGGAGGATGTGAGGCAGGGGGCCGGGGAGCGCTACGGGGCCGAAAAACTCGCCGAGCTCTGCAAGCTGCTGCCTGACAGCGAAGAGgAAGCACGGCTGAAGAGGTTTAATGGAGAACGTAGCACGCTTGGAGAGCCAGATCTCTTCATGCTCTTTCTGGTGGAAGTACCGAACGTTCGCCTTCGTCTGGATGCCATGATGCTGCAGCAGGAGTTCGACCCCGCTGTGACCTCTCTCTGTGTGGCGGCCAGATGTCTGGGGGAGGCAGCTCGAGaattgctAAGCTGCCACCGGCTTCACTCCATCTTGCGTTTGGTGCTCAAGGCAGGGAACTACATGAATGCTGGAGGTTACGCAGGAAACGCAGCCGGCTTCAGAATCGCCTCTCTTCTCAAACTGGCCGACACCAAAGCCAACAAACCAGGCATGAACCTCCTGCATTTTGTTGCCATGgaggCTGTGAAAAAGGATGAAGACTTGCTGACATTTCCAAGCCAGCTGAGTCACGTCAGTTCAGCCTCAAGgttATCAGAGGAGTCTGTGCTTGAAGATCTGTGCCGGTTACAGAACAGAGTAGCAGCACTGAGGGTCAGCGCGCAGGCTGAGGCTGAGATTGAACAGCAGACAAGAACTTTCCTGGAGATTACAGAAGTGAGGCTGAAGGAAGCTCAGGATGAAGTAGACTGCTTGCGAAAGACGAGTGAAGCTTTGGTGGAATTTTTCTGTGAGGATGAGAATTCCTTTAAGCTGGAAGAGGCCTGTCGTATCTTTCACTGCTTCTGCCATCGCTTCCAAAAAGCTGTTCGAGAGAACACTGAGCGGGAGTGTCAGGAGCAGCGGCGAGCAGAGCGAGAGCGGGAGAACGTGGAGAAGCGACGCTCGCTGGCTCTGTGTGGGGGCCCGGATCTGGGACGAGAGCCTGACGACCTGGAGCGAACGCTGGAGAGGAGCCTGAGCTACACCTGGAGCCGCCGCAGCCTCCGCAGGCACTCTCAGCACTCACTCAGCACTGAGTATAAAAACTCAGACTCTAACTCCACATCACCCCTCGTTTCTGAGGGACAAGACCTCCAACAACTCCTCAGTTCTGAGGGTTACAGTAGAATCTCTGCGCTTAGCAGACATGCACTCACCACGGACAGCGTTAATAACACAAATAATCAGAACAGAACTAAAACGGACTCTCCAACAGGAGAACGTGTGATGAGAACAGACTCTGCACGGGTTCTTCACAGAGACACAGCTGTTTGCAATAGTTTGGATAGCCCAGATAACACTGCTACTACTGCGAGGGTTAATCCAGTAAAAGCATCTACTGATAATGCCTTTATTTCTCCAGAGGAGAAAAGCTCAGTGCAGCATCAGGATACGGATACGAcaaatttctctctttttactgAACAGTCAGCTGAGAAGGAGTTAGAGACCGTGGAGAAAGGTGAGAGACGGGACGTGTTTCAGAGGGTTTCTGAAAGGTTAGCAGACGTAACTGCAGACTGCGTTTTGGAAGATGTAGAGAAGCAGGACAGTACGGATGCTGATGAAGCCACCTCTCAGCATCTTCTACACAAGATCACGACAGTTCTGGAGGATTCCACCAGTACGACAGGTCCAGAAGTGGAGGTTTGGCCAGGAacctgcactgctgaggtagtaCTAAAGGTGGTACTAGCGCAGGAGCCGGAGTCAGCCAGCCCGGAAAAAGAGCGCACCTTTCCTCGAGTGGGCGAGACTGTGGAGTGCCACACTCTGGTAAAAGGCCTTCGATCATATGAGGTCCTTTCTCCTCCCGCGGGCTCACGGCAGGCTCCCAGCCACTGCTCCAAATGGAGGAAAGAACTTCAAGCTGAGGAACGAGACGGAGCAGAATCTCCTCAGGCCAAGGAAGACCTGCGTTCTGGAAAGACCTCAGTTCGAGGGTCTATTAAAAGAGGGATGATGCCCCGAAGTTTCCTCTCCAACAGCACAGGCGTTCCAAAAGTGCGAGCGAAGGCTGATTCAAACCTTCCTGAAGCTTCCTCAACCCCTCGCGCTTCACGCCTCACTCCTCCACGCACCTCCTCCATGCGCTTATTGCCAATCACGCAGCCCACCAGCATCCAAAGTGAGCTGAAACGCAGCAGTAGCACGCGAGACAAGGTCAGCGCTCAGTCTGAAACAACGGTTAAGCAAAACCGGCGACCTGCGGAGAAATCTGGCCACGAGAAGGAGAAGACGCTCTCGAATCGTGAGAAGTTTGTTAGAGGTTCTCCGTTACGAGTGACCAAGCGTTTCGCCTCCACTTTGGAACCTCAGAGCCCAAACCAGACTCGTACTGTTCATAGCCCCACCGCAGCTACGAATGCGAAAAATATCCGAACTGCCGTCATCAACGCAGCCAAAGCCAAAACAGCCAAGAACACAGAGACCACCTCCGCCAAGACGACACCAGGGACGAGAAACACCGCGCCTAAAATCCCACGAGCTGCTTCAGCTCAGCCAATGTGGAGGTGATGTTAAACACCTGGTCGTCTTCAGCTAGTAGTCACATCACTGTGTATTAATGTAATGTCATGTcatgtgaatgtgaatgtgtaatgtgtgtgcttatattatatacaggggttggacaatgaaactgaaacacctggttttagagcacaacattgaattctgccgtgatttgagcagccgtggttttattatgtttttgagATACAATCCGCTTCCTTTTagagcgtccacagttaatcctgttggatgtggttggtgcttcttggtggtatgctgacattaccctggataccgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683695.1 True 3526 mRNA 0.53 12 18191791 18208886

Neighbor

gene id symbol gene type direction distance location
slbp NA coding downstream 11269 18176707 ~ 18180522 (-)
ccdc142 NA coding downstream 15676 18165988 ~ 18176115 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 112309 18076055 ~ 18079482 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding downstream 207722 17959960 ~ 17984069 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding downstream 293230 17891868 ~ 17898561 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding upstream 71747 18280633 ~ 18282899 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 128806 18337692 ~ 18343003 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding upstream 148103 18356989 ~ 18370024 (-)
LOC103026001 NA coding upstream 170908 18379794 ~ 18385052 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding upstream 215872 18424758 ~ 18636999 (-)
LOC103029928 NA non-coding downstream 5004 18183427 ~ 18186787 (-)
LOC111195818 NA non-coding downstream 69304 18113718 ~ 18122487 (-)
G206348 NA non-coding downstream 152642 18034140 ~ 18039149 (-)
G206271 LOC108436176 non-coding downstream 289227 17901879 ~ 17902564 (-)
G206275 NA non-coding downstream 348248 17843285 ~ 17843543 (-)
G206434 NA non-coding upstream 61577 18270463 ~ 18274321 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding upstream 67371 18276257 ~ 18278541 (-)
G206443 NA non-coding upstream 70925 18279811 ~ 18280130 (-)
G206444 nsdhl non-coding upstream 75007 18283893 ~ 18286260 (-)
G206446 nsdhl non-coding upstream 80089 18288975 ~ 18302819 (-)
LOC111195732 NA other downstream 149852 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 339600 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 890798 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1826144 16203937 ~ 16365647 (-)
G205670 NA other downstream 2359697 15831650 ~ 15832094 (-)
G206575 NA other upstream 629483 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 828808 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1716145 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1748591 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1898211 20107097 ~ 20274905 (-)

Expression


Co-expression Network