LOC103038011 (uprt,LOC108440089,LOC108443770)


Basic Information

Item Value
gene id LOC103038011
gene name uprt,LOC108440089,LOC108443770
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19350901 ~ 19359251 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683719.1
AACTGGTTAGCCTAGCCAGCTAATGTCAACTTCTCATAACTTACAATTAAGTTACTTACCATTGGCTTAGTTTAGCTAGATAGCTACCTTTAGTTAACTTAAGTagaatttgtgttttattttattaaacacaaaacatttatgACAACCTTCTAAAAGCCTGTCGTCAGTAAAACACTCCCCACCCACCACCAAACTCACGCTGAAAAAGCTATAGCTAGCATGCCATCAGACAAACTAAAACATGCTAAGCTAAGcagtaacagcagtaacagTGAGCATGGTGTAATGAAGCAGGTCCGCTTCTCCAGCGGCTGTAACTCAGACAGCGACTCTCAGGAGAAACCGTGCGGAGCTCCGCTCAGCGGCCGCCCGCAGATCCAGCTCGGGCCTCAGCTCAAGCTTTTACCCCTGAACGACCAGGTGCGAGAACTGCAGACTATACTGAGAGACAGGTCAACCAGCAGAGGGGATTTTGTGTTCTGTGCGGACAGACTGATTCGTCTAGTGGTTGAAGAAGGACTGAATCAGCTTCCGTATACTGAGTGTGTAGTGACCACACCAACTGGGCACAAGTATGAGGGGGTCAAGTTCGAGAGAGGCAACTGTGGCGTCAGCATTATGAGGAGTGGCGAGGCGATGGAGCAGGGTCTCAGAGACTGCTGCCGCTCCATCCGCATCGGCAAGATTCTTATACAGAGCGACGAGGAGACCATGAAAGCCAAGGTTTATTACGCCAAGTTCCCACCCGACATTTACAGACGCAAAGTCCTGCTCATGTACCCCATCCTGAGCACTGGAAACACAGTGATTGAAGCGGTGAGGGTACTGATGGATCATGGTGTTGATCCTTCACACATCATCCTCCTCAGTCTGTTCTCCACTCCTCACGGGGCTAAATCTATAATTGACGAGTTTCCAGAAATCACTATACTGACTACTGAGGTGGACACGGTCGCTCCGAGTCACTTCGGACAGAAATACTTCGGAACAGATTAATTTACTGAatttacacccttttaaatGTGTGccttattttcatattttgcattgCAGTATTACGTGTTCTACACaaaatattagtatttatttCATGTTCTCGAGGTTTGTTGTTATCTTAGGAAGTGTCTGGTAATGTCCAGGTCACACGTTGTCTGCCTTAATATCCTGGGAACTAAACTCTTGGCAGAACTCTGGGTCAGATATCACTTCCCCTGAAGCCTCTCCGTCAAACTGCCAAAGCTCCACATAACGGTCCTACCAAGGGGGTTAAGACTATTAAATACAGGCAATATGTTAGGAGAATATGTGGTTGAACACTTAAAAAGTTCTGTTTGGTTCAATGTGTGActataaatacatgtaaaatataaacaaacaccTACAGTTTTCA

Function

symbol description
uprt Predicted to enable GTP binding activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human UPRT (uracil phosphoribosyltransferase homolog).

NR:

description
PREDICTED: uracil phosphoribosyltransferase homolog isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683719.1 True 1393 mRNA 0.45 8 19350901 19359251

Neighbor

gene id symbol gene type direction distance location
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding downstream 82567 19258598 ~ 19268334 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 713902 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 965849 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 980877 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 1007898 18337692 ~ 18343003 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 217246 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 235053 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 246774 19606025 ~ 19623243 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding upstream 546492 19905743 ~ 19913308 (-)
LOC103047376 LOC108413285 coding upstream 555298 19914549 ~ 19932986 (-)
G206613 NA non-coding downstream 93870 19256544 ~ 19257031 (-)
G206597 NA non-coding downstream 180262 19160405 ~ 19170639 (-)
G206593 NA non-coding downstream 211444 19063499 ~ 19139457 (-)
G206595 magt1,LOC107566011,LOC106604089,LOC106592046,LOC107689142 non-coding downstream 213254 19134598 ~ 19137647 (-)
G206589 NA non-coding downstream 325520 19022154 ~ 19025381 (-)
G206629 abcb7 non-coding upstream 44959 19404210 ~ 19407338 (-)
G206640 NA non-coding upstream 136181 19495432 ~ 19511159 (-)
G206634 NA non-coding upstream 154866 19514117 ~ 19516119 (-)
G206653 NA non-coding upstream 206961 19566212 ~ 19566544 (-)
G206685 NA non-coding upstream 242348 19601599 ~ 19681210 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 223175 19037694 ~ 19127726 (-)
G206575 NA other downstream 511985 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1308962 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1498710 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2049908 17259786 ~ 17300993 (-)
LOC103046671 NA other upstream 565780 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 598226 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 747846 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 1104452 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1318202 20677453 ~ 20782984 (-)

Expression


Co-expression Network