LOC103043211 (LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798)


Basic Information

Item Value
gene id LOC103043211
gene name LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20180310 ~ 20188753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683731.1
GTCACATGCTCCTCAGTGACGACAGGATTTTAAGGGGAACTGCTggtttggtggtggtggtggttactGAGGCTCAGCAGATCAGGGGACAATGGTATTAATTTACTGGCGTTTGTAAAAGatttGAGTCCCTAAAAAGATCAGTGTGCTGTGGTGGAGTGTTCTCTTTTGGGATTGTATACAGCAGACTCTGTCACAGACAGGGGAAATGTCCAGCACAGCCATGAAGAAAAAGGTGTTGCTGATGGGAAAGAGTGGGTCGGGAAAGACCAGCATGAGATCAATCATCTTCGCCAATTATATTGCCAGAGACACTCGGCGACTGGGAGCCACAATTGATGTGGAGCACTCCCATGTGCGTTTCCTTGGCAATCTGGTTCTAAACTTATGGGATTGTGGTGGACAGGACACTTTCATGGAGAACTACTTCACCAGTCAGAGAGATAATATTTTCCGCAACGTTGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGAGAGTTAGAGAAAGACATGCATTACTACCAGTCCTGTTTGGAAGCAATCCTTCAGAATTCACCTGATGCTAAAGTCTTCTGTCTAGTTCACAAAATGGACCTTGTTCAGGAGGATCAGAGAGACCTGATATTTAAAGAGCGTGAAGAGGACCTGAAGAGGCTGTCCCGCCCATTGGCGTGTACCTGCTTCAGGACCTCTATTTGGGATGAGACACTTTATAAGGCATGGTCAAGCATTGTCtatcagctcatcccaaatgtgCAGCAGCTGGAGTCCAACTTGAGGAATTTTGCCCAGATCATCGAGGCAGATGaggtgctgctttttgagagaGCCACTTTCCTGGTGATCTCACACTATCAGTGCAAGGAGCAGCGAGATGCTCATCGCTTTGAGAAGATCAGCAACATTATTAAACAGTTCAAGCTGAGCTGCAGTAAGCTGGCCGCCTCCTTCCAGAGCATGGAAGTGCGCAACTCCAACTTTGCGGCTTTCATTGACGTGTTCACCTCCAACACCTATGTGATGGTGATCATGTCTGACCCCTCCATACcCTCTGCTGCCACCCTCATCAACATTCGCAATGCCAGGAAGCATTTTGAGAAGCTAGAGAGGGTGGACGGCCACAAGCACAGCTTGCACATGCGCATGCGCTAGACATCTGATCCTGCCTACAGGAGCTCTCCTTCCTCAGAGGGCCTGCGCGCCGGGGAAACGGCACTCTGGGGAAATTCCTCCTATCTGCTGACTTCACTGCATCCAGGGTGTTTTGTAGAGACTCTTTCATCCCTCTTAAGATCAAAGACTTTTTCCCGGCTTTCTATCTGGAACTCTTTGAACATAACGCTGGATGGGACTGAAGAAGGtggtataaatacaaaaaaaaaaaaattatgactaAGTGGTGATAAAATACGTTTAGGGATGTAACGGtataaaaacagatataaaaaataatgttttgaaggggaaaacacattttaaacatacgTCATCCCCTTAACACGTAAATAGTGCCATACAGTAACCTGTATTCAAACACTTCACACAGAAGAAGAAcacatcaaatatatatattttttcctcttttttctggttttgtttagtttttcctCTGTTCAGTTTTAATGGATTTGCATTGTTTGGGTTCGAGTGTTgcgtgtgctgctgctgcttgccACAGTACAGGCTATTGTACAATatctacaaaatatatatatatatatatataaatacaaaagatgACAGTGACACGTGTTTATGGAAAATCTGCAAGGCTAaactgttgtttaaaaaaaaaaaagcaaaaaaaaaaaaaaaaacttggtcaCAGTCCTTCTGAAGTAAAACACGTGGACACATCTCTTCTTTTATATACACAAAGGATATACTGTTTGTATTTCCTGTATTTATTATCTCGGttgattgcaaaaaaaaaaaaaagaaataaaatcaaaggaaGTATGAATGTCCTCTGAAATAAAACGCTCTTTTCTTCATA

Function

NR:

description
PREDICTED: ras-related GTP-binding protein A isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683731.1 True 2000 mRNA 0.43 11 20180310 20188753

Neighbor

gene id symbol gene type direction distance location
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding downstream 39251 20123147 ~ 20141059 (-)
vamp7 vamp7 coding downstream 75470 20099499 ~ 20104840 (-)
LOC103045046 LOC103045046,LOC108443105,LOC103391141,LOC107573550,LOC108269394,LOC107674873,LOC101076287 coding downstream 95850 20077520 ~ 20084460 (-)
prps1 prps1,prps1b,LOC103391169,LOC107565138,LOC108413289,LOC104923196,LOC107746314,LOC107684920 coding downstream 202452 19968907 ~ 19977858 (-)
LOC103046360 NA coding downstream 224731 19952166 ~ 19955579 (-)
cysltr1 cysltr1,LOC107703837,LOC107576072,LOC107591877,LOC107688612 coding upstream 51114 20239867 ~ 20244489 (-)
itm2a itm2a coding upstream 184133 20372886 ~ 20382010 (-)
LOC103041461 chmp1b,LOC101476317 coding upstream 244772 20433525 ~ 20441496 (-)
hdx hdx coding upstream 597261 20786014 ~ 20800527 (-)
tenm1 tenm1,LOC105906218 coding upstream 792002 20980755 ~ 21355637 (-)
G206784 NA non-coding downstream 93817 20086177 ~ 20086493 (-)
G206782 NA non-coding downstream 105620 20074425 ~ 20074690 (-)
G206763 NA non-coding downstream 328349 19814974 ~ 19851961 (-)
G206685 NA non-coding downstream 499100 19601599 ~ 19681210 (-)
G206653 NA non-coding downstream 613766 19566212 ~ 19566544 (-)
G206843 NA non-coding upstream 176161 20364914 ~ 20372471 (-)
G206856 tbx22 non-coding upstream 229563 20418316 ~ 20418553 (-)
G206859 NA non-coding upstream 344827 20533580 ~ 20537400 (-)
G206912 NA non-coding upstream 529196 20717949 ~ 20725371 (-)
G206991 NA non-coding upstream 1012420 21201173 ~ 21208804 (-)
LOC103046671 NA other downstream 185508 19925031 ~ 19994802 (-)
LOC103046056 NA other downstream 212279 19957477 ~ 19968031 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 1052584 19037694 ~ 19127726 (-)
G206575 NA other downstream 1341394 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 2138371 18039675 ~ 18041939 (-)
LOC103040850 hmgn5 other upstream 274950 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 488700 20677453 ~ 20782984 (-)
LOC103034681 LOC108436714 other upstream 1575351 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 1791046 21979799 ~ 21982730 (-)
LOC103035944 mical3 other upstream 2696679 22885432 ~ 22956024 (-)

Expression


Co-expression Network