rep15


Basic Information

Item Value
gene id rep15
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 23052373 ~ 23053260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683817.1
TCTTTAACCAGGACCAACTAAGATGAACCAGTCGGAGAACCAACCCAAGACTAAACCAGGGATATTTAAATCGCTGTGGTCAAGTTCCAGTAACTCATCCCTCACATCCTGCTGCTCTCTGTTCAGCGACTGCATCCGTGCAGCGTCGACCAGGACCAGTGAATATCTTCTTTTCTCCGACCCAAAAAACAAGTTCCAGCCCAGCCCTGCTGCCCTGTGTGAGATCTTCCTCATGACCTACATCCAGCGCAGCAACCAGCTAAACCTCACAGAGACCATCCACTGCACGGTGATGACCCGGGAACAGAGGCTCGTTCTGGGGGCCGACTGGGTCTGGGCTCTCCTGGACTCTTCCAGCAAGAAGGAGCCCAGAGTCCAAATTGCTGTGCAGGTCCTGCATCCTCCAGAGAAAATGAAGGAGAATGTTGAGGAACGTTCCTCAGACGCCTACAAGGAGATCTTACGTACGGCTGGAATGGAACCCATGGAGAAAACTGGAGCTGAGAGAATGGTGGAGTTCTGCTCTGCCATCGGGAAGACCTGctttgctctttttctctttttcggCGTCAAGAAAGACCCGGCGAACATCTACGGGCTCCTGAGCAACAACCTGCATGTGGCTGTTGGGAAGTGCGTTCAGATTGACCAGGCTTTTATAGAGAATTTCTTCAGAGGAGCCAAACACTATGTTTCTCCAGCTGCGATGTTGCAGACGGTGCTGAATAAGCAGGATAATGAGCCTCTCACCATGCTCGTCAAAtttaatatatagatatatatatatataaccttcTTATTTTCATAAACAACAGTTGTGactgttaacccttgtgtggtgttcatatttttgttactcgtttactttgttacttgtatttaattcag

Function

NR:

description
PREDICTED: rab15 effector protein

GO: NA

KEGG:

id description
K20243 REP15; Rab15 effector protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683817.1 True 888 mRNA 0.48 1 23052373 23053260

Neighbor

gene id symbol gene type direction distance location
LOC103023170 far1,far2,facr1 coding downstream 39193 22977553 ~ 23013180 (-)
LOC103023692 parvaa,LOC108441481,LOC108269306,LOC107686640,LOC107573077,LOC103142483,LOC105910371,LOC107589155,LOC107707483 coding downstream 169337 22868422 ~ 22883036 (-)
LOC103024231 tead1,LOC108269170,LOC105016886,LOC105018259,LOC106587195 coding downstream 231447 22791567 ~ 22820926 (-)
LOC103024959 NA coding downstream 262621 22781626 ~ 22789752 (-)
LOC103026420 atp6v1e1,LOC107707480,LOC107701013,LOC108269194,LOC107575294,LOC107732807,LOC108442797,LOC102197685 coding downstream 369277 22676368 ~ 22683096 (-)
olfml1 olfml1 coding upstream 108686 23161946 ~ 23167486 (-)
syt9 syt9b,syt9,LOC108410565,LOC107572357,LOC107707488,LOC107686648,LOC107701097 coding upstream 148758 23202018 ~ 23261354 (-)
LOC111195748 NA coding upstream 171345 23224605 ~ 23225055 (-)
LOC103047696 kiaa1549l coding upstream 452748 23506008 ~ 23602345 (-)
LOC103046977 LOC108410746 coding upstream 558803 23612063 ~ 23655103 (-)
G207536 NA non-coding downstream 306 23051066 ~ 23052067 (-)
G207514 NA non-coding downstream 189356 22763398 ~ 22863017 (-)
G207511 NA non-coding downstream 306546 22743938 ~ 22745827 (-)
G207506 NA non-coding downstream 317348 22711877 ~ 22735025 (-)
G207505 LOC108441495 non-coding downstream 342928 22707434 ~ 22709445 (-)
G207531 NA non-coding upstream 42561 23095821 ~ 23098906 (-)
G207552 NA non-coding upstream 188484 23241744 ~ 23243273 (-)
G207551 NA non-coding upstream 194273 23247533 ~ 23290028 (-)
G207557 NA non-coding upstream 475175 23528435 ~ 23529136 (-)
G207604 NA non-coding upstream 849654 23902914 ~ 23903144 (-)
LOC103035944 mical3 other downstream 96349 22885432 ~ 22956024 (-)
LOC103034681 LOC108436714 other downstream 805260 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 1069643 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 2269389 20677453 ~ 20782984 (-)
LOC103040850 hmgn5 other downstream 2540086 20463703 ~ 20512287 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 167209 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 885665 23938925 ~ 24020314 (-)
G207707 polr2c other upstream 1471474 24524734 ~ 24529067 (-)
G207772 NA other upstream 1894871 24948131 ~ 24948851 (-)
usb1 NA other upstream 2197975 25251235 ~ 25260167 (-)

Expression


Co-expression Network