G50876


Basic Information

Item Value
gene id G50876
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 727073 ~ 728482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57898
TGCTTAATAATAGTTTATTCTCTTTCTGAACATGATAAAGTACAGTACAGAACAGTCCTAAACACTGTCTTCCTGATGAGAGAGTGGAAACAGCACACGTACACTGAACATGCTGTGAATCAAACAGCTTCAGACAATATCAGACATGTGAACACTTGGATGTCAAACATCAACATTGATAAAGCCTTATACATGCCACAAAATCTCTCATTTATTATAAGGTGTGATATAAGGTCTATGCACTTGACTGATGCTAACAAGAGTATTAGATATAAAGGGGGTGTACACATTCATGGAGACCTCACAGTGACATGACGGGTCAAATGGATCAACTGGGGAATTAAACTAGCCTCAAAACTCAATATAGGGGCTGTAGGCATTGTGCTTATACAATATGTTTGTATATGTATGTGTTTTTAGTGACATTTTGTGTATTACAATCCCTCTTTTTTCTTTTTCTATCCAAATAGAACCTCAAACCACTTACATTTTTATAGAAAATTATATTCTTAGGGTTTCTTTGTATTTTTGGTTATGATAAACATCATGCATTTGTGCAGTGTGTAATTTCTTCAATGCTAAACTACTTTCTCCTTTGGGATGAGTCGTTCCTGTGCGATACAACAGTGACGGGGGGAATCTACCTAACAACATTGATGTCATTGTATTATTTGCATGCTGAATTGTGACTAGTCTTTAGAAAACAGGCTTAATGATGTCTTAATAGAATTGTAATCTACTTTATCTACTTTACATTTGGGTAACTATCATTTTACCGAAAACACTGGAATTTCTTAGAGGAACTGTAAATCTAGTTGAAGGTAATGAACCACATTGTTCCCAGATATTCTTCATGTCACACACCTATTTTCACATTCTAACTGTGGTAAAACTAGCTATGAAATTTAACTGACAGCATCAGTCTCTCTTAAGCCAAAATTTGTGTAATACAGTCTTGACAGATCTGACATGATTATCGTAATATCTTTTGTGCATGTCTATATTAATGTGCTCATAGAAAGGATTGATCACATCCAGTACATTGTTCTCAATTAGTCTGCCACGTGTGCAAGCATTATGTGCAGGTGATATTTGTGCAAATTGGATTCATTTTTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTATGGAGGAAGTGCTTTGTGCTTTGTTCTTTTAAGGACAGCTGTGACCTTTGATTTTTGATAATGTTCACTGTGCTCTTTTTAAAATAGTACTCATGTGCGATTCACAGTTATGACCAATGTGAGTGTTTTGAAATATAAGGTTATACTTTAGTTCAAGGTGTCCTTGTTACAATGTCATTATACATTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGCCGTTCCACACCCGTAAAACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57898 True 1410 lncRNA 0.35 1 727073 728482

Neighbor

gene id symbol gene type direction distance location
CI01000009_00719164_00724772 SRPX coding upstream 2022 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 16268 704065 ~ 710805 (+)
CI01000009_00620687_00621072 NA coding upstream 105536 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 109311 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 117698 608513 ~ 609375 (+)
CI01000009_00805606_00808374 NA coding downstream 76422 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 122760 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 185513 913995 ~ 916565 (+)
CI01000009_00920570_00955979 TBC1D4 coding downstream 191946 920428 ~ 956574 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 306079 1034561 ~ 1035728 (+)
G50902 NA non-coding upstream 29233 697605 ~ 697840 (+)
G50878 NA non-coding upstream 31858 694026 ~ 695215 (+)
G50880 NA non-coding upstream 82024 644785 ~ 645049 (+)
G50883 NA non-coding upstream 90368 636474 ~ 636705 (+)
G50881 NA non-coding upstream 103116 623734 ~ 623957 (+)
G50879 NA non-coding downstream 381 728863 ~ 729820 (+)
G50909 NA non-coding downstream 7245 735727 ~ 736025 (+)
G50911 NA non-coding downstream 13519 742001 ~ 745178 (+)
G50913 NA non-coding downstream 17712 746194 ~ 756171 (+)
G50917 NA non-coding downstream 28640 757122 ~ 760273 (+)
CI01000009_00094836_00095813 NA other upstream 631286 94371 ~ 97230 (+)
G50920 NA other downstream 41359 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 694365 1429873 ~ 1435328 (+)
G51122 NA other downstream 951664 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1165753 1897343 ~ 1919516 (+)
G51274 NA other downstream 1526617 2255099 ~ 2350486 (+)

Expression


Co-expression Network