LOC103040081 (snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071)


Basic Information

Item Value
gene id LOC103040081
gene name snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25412186 ~ 25452091 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683879.1
ttgatttttctctcttttatgtcCAGGTGATGACCCACTAGGTCTCCAGCATCCTGCCGTCACACACCCCAGCCCTGCATACACCTTTGTATCAAACCAATATGGCCGCCACCAAGAGCGGCTATGAGGGGAAGATCGCCGGCCTGTACGATCTGGACCGGACTCTGGGCAAAGGTCACTTTGCCGTGGTCAAACTGGCGCGGCACGTGTTTACCGGCCAGCTGGTGGCCGTGAAGGTGATTGACAAGACAAAGCTGGACGGGATGGCCATGGGACACCTGCTGCAGGAGGTCCGCTGCATGAAGCTGGTGCAGCACCCCAATGTGGTGCGACTCTACGAGGTGATCGACACGCAGTCCAAACTCTACCTGATCCTAGAGCTGGGCGATGGCGGCGACATGTATGACTACATCCTGCGCCATGAAGGTGGCGTCGCTGAGGAAACCGCCAAGGTCCACTTTGCCCAGATTGTTCGAGCCATTGCGTACTGCCACCGGCTCCACGTGGTCCACAGAGACCTGAAGCCGGAGAACGTGGTCTTCTTCAGACAGCAAGGGACTGTCAAGCTTACTGACTTCGGCTTCAGTAACCACTTCCAGCCCGGGACCatgctgatgacaagctgcggATCACTCGCTTATTCAGCTCCAGAGATCCTGCTAGGAGAAGAGTACGACGCTCCAGCCGTGGATATCTGGTCACTGGGTGTGATCCTCTACATGCTGGTGTGCGGCCACCCGCCGTTTCAGGAGGCCAACGACAGCGAGACGCTCATCATGATCATGGACTGCAGATACACCGTCCCAGATCACGTCTCTGCAGAGTGTAAAGAtCTTATCTCTAGGATGCTGCAGAGGGACCCCTCTAAGCGGGCGAGCCTGGTTGATATTGAAGCCCACCCATGGCTCAATGGGGTCGACCCCTCGCCTTCTGGCCACAGCGCTGCCCCGCTTACCTCCCACCGCAGCCTCTCCCCACACGAACACGAACTCATCCTGCAGGCCATGACCAGCGGCAACATCGCGGACAGAGACACCATCCAAGAagcaCTGGAGGCTGACAGATATAACCACATCACAGCTACATATTACCTACTGGGAGAACGCATCCTACGAGACAAGCAGGAGCAAAATGGCCTCGCTCCAGAGCAAAGGCATACAGAGAGGCCCTTATCTGAGCCACTGGACCTGGTGGAGGGCCGGAGTCCCCAGGCCGATCCCCTGAGAGGTGCAACTTTGGCTCCTGTGGCTCCACTAGGCTCCCTATCTCCAGGGTTCCCCCGCCGGGGCGTGTGTGAATCCGGAGACCTGCTGGCTCCCAAAACCAGTCGTCAAGACGGCTCCTTCGGCGACTTTGGTGCCCCAAGCTCCTGCCTGGGTCTTAGTCTCCGTTCTGTAGCTCCAGAACCAGCCCCAACTGTGAAAAGCCTTGGGGCTCTACAACAAATctgtgaagaagaagaggaggacgATGTGGAAGGTGAAGAAAAGGAGCAAGGTGAAGTTCAATCTGCTCAGCAGGTTAGCAAACCTTGCTTAGAAGTGTCAGAAGAACCTTCTTCAGAATCGTCTCACTCACTTTCTGGCTCAGAGCAGAGGAAGGGAAGAGGGAAGGTTGGGATGTTAGTAGAGGAGGCACTTCAAGAGGTGGAAGAAGAATGTGGTAAAGAACAGGAATCACAAGATTTAGCGGCTAATATCTGCAGGATGACTGAGGAGCATCAAGAGAAGCACACCAGCAAACAAATCAGTGAAGATAAGGAGACCATGTCCCAGACTGAGGGAACACAGAACAATAAGCACCCAGGAAGGGATGGACTGGGGAACAATCTTGACAGCACTGAAGATGAAGGACGGAGGGAGCAGAATGGACCTCCTCCAACAGAAGCACCTAGACTTAATGCTGTGCAATGTTGCTTGGGTCAACTTGAGCCCTCCAAGGACACTCTAGAGGACAATAACAACACTCCTTCCAAGGCAAAGCTTCTGGACAAAGGTGTGATCTCTGCCCCCTGCAGTTCACCACGCTCTTTGCCCAAGAACCACTGCGTGGACCTGGGCCCAGATGGAGTGGAGATGCGCAGGATGGGTGGGGAGGGTGAGAAAGTGGAAGAGACCCATACCAAACCTCAACAGGGCCACCGGGTATCTAGGGATGCCGGGACGGACATCAAGAACAAGAACGTGAACCTGCGAGACCGCCTGTTGCAGTTTCCTCTCTGTGAGAAAGCCCTGTCCTTCAATATTCAGCCCACCTCCAAAGAAAAACTGCTTCCCTTCGCACAGTATAACTGTTGCCACGTGCTATAGGACGAGAGAGACGTTCTGATGAGAATGAATGAGGAGAATGTGAAAGATCGAGAGCAAGCCTCTCTCTTTCCCAGATCTCTACATTCCCTAAACGTGTATAAGCCGTCCAGACCTTCTCCAGCATCATTAAATCATGCTAGCTCGTGGATCAGGTTACTTCTCATTTCTCCTCCCTTCTCCAACACCAGTAGTTTTTAAaagacacagtgtgtgtgttctcctcTCTTACTGTGACCTCAGAGGTGCTCTGGCTACACACAGAAAGCGCCCAATCTACTTATCTTACACCTGTAGCTGCTCCCACCCCCAACCCAGCAGTCCCTGCTGCTTTCCCGTGTGGCGGCTAACCTCCTAGCGCTGCTGTGTATATAAACACCTGTATCTACTGATGCCACTCGCTGCATTGTGTGCTATCTCAGTGACCTTTACTAGAGCTAGAGTATGTCTTGCCAGTGTAGAAGCCCCCTGTTTAATACAATCgctttgttgttttgcactCTTAACGGCTTCTCCAGAACAGATCTTCACCTAAAAAAGATGTCAAGTCAAGAGGGAGATGTAAAGCACATGTGAAGCAGatgttaaataaatagtttGATTACATGCTTTAGTGTAAAATGAAACATaaactgatcagccataacattagcaccacctCCTAATATTGTGTATTAAGTCCTTGCTACTATTCGGAGAATTTATTGAccaagaaaaccaaaaaaaaattaacagcaGGTGCTGTTAGCATGAGCATCAGTGATGCTTGGGTCCTGTGATCCTATTGCCGCTCCATCGGCTGGCCTTCCTTAATGGGGAACACTCCACAAGACACGCTTGATGTTCTGGAGATATTTTGAACCAATCGTTCAGCCATTACTGTTTAGTTATTTTCAGTTTGGAGTGTCTCAGatccttttcttttttggctttcttgctTCCACCATATGAACTTAAGAACAGAAAAAGCCtctgtagattaatataatcaatatatatattcccaAGTTCACTTGTcagtggtgctaatgttatggaTGTTTGGTGTATAGCACTATTAATATTgttgatttttcatttttgcattgGCTAATGCGCCGAGCATCAGTTAGCTGGTTAAATTATTTCCTGCACTTAAAAcccagacagagaaaaaaaagttctgaATTTGTCTGAAGATGACTCCAGATTTTAGGTTTCCTGAGGCCTCACAGCATCTCCATCGCATTCAAGATTACTATTAGATACCACATAACAATCAGCATGACGCTGGGAAACCTTTGAGAACCGCAGTTTGGTTCAGTTAATGGATCACAGTCTAGTGTAGGAAGGTGCATGGCATTGGCCCTATGGCATCTGTCCCTGTTCCTCTGGCCAGACTGTAAGTGGGGGGATTTAGTAGGGCCAGGATGCATGAGAGGCAGATTGAGCATTTAACTGTTTGGGAGCACGGATACGGGAGCATGCTACATTAGCAAAGCTTAGACTAGCATTAGCGCCACGCTAGCTGGGTTGACCAGGGAAAGGCTTTGGAATATAtctgaaatacatttttccatGGAAAAGGACTTGAACAGAGGTTATAGTGAAAGACTTTCTGTGAAAAGGACATTATCCGACGAGAGAAGACTGGTCTTCCTGAAGCTAtttttttgatgtgtttttctttcagaCAAATGGAGTCAATGGATATTCTTGGAAATGTTATGGGATTTTTTATCATATCAGAGCCTTATTAAGGGTATGTTGGAAACATGGTGACGAGTTCATATCATTCATTGTTTTCAttgattttgtatttaatttggttttatttcagtttttacaTAAGAGGACCTTCTTGAGAGAATGGAAGAGTTTGGGTGTAAAATCTTGAACATTAATCTTGACGTTATTGTTTATTGGCCTCTTTATTGAGTGCATCTTGACTGTTGAGCAGGCAGTCTCACAGTATAAGCTCTTGGACACGTCTGGtcatgtacagtgtgtgtatatatattcttttgaGCATGTGTGTTGCTATCTATGTATATGCTATTAACATGATATTGTGTTTTGACCTAACATAGCGTTTGATAATACTAGCTCTACCCCTCCTTGTCATTAGATATCTTACAGtgaagagagtaaaaaaaaaaacattcctctAAAGGTGATTGCGAGATTGTAGAAAAATGTTTAGGAACATGATTTCAAAATCTTACATTTGCCTCTTCTAACAGCCAGGGAATGGTGTGTGCTAAATGCAAAGGTGGCAGATCCAGATCCAAAATCCTAGAGTGAATTTTTCGTTCTAGATCTGGAATTGCCATCtcaagctacaaaaaaaaaaattaggctaCACACAGCACAGGTTTTCTCTTAACACAGACAGCACAACATACACCTTAACCTGCCACATCTGTAAATCAGTGTCATTCCGAAGTATACCTCTAAATAGCTTAAATCCACAAAGTCAAggtagcttttttttaagtggtggCTATTGGTTATCTGGTACTCTCAGTGATGTGTAAGTGGCTGATTGGGTTATTTTAAGCTGTATGAAGGaaactaaaacattttcacGCGTGATCAAGTCAGTCTTGTGAGTTTACTGTTTCTGTCGCACAGCCGAAATACAGGCGCAAACTCATTTGGGGCACACTGATACCCTCTCTTAAAGACCACAGATAAGCTGGCCCAAAGAAGGCTCTGAACAACAAAGTCAATTATGCTATACAGCACCGGGTGCTATGAGAAAACCTAATGGATCAATACTGAATATCTCTAATAGCAACTGAAGCATATTTAGATTTTGTGTTTAGATACACTGTAGAGATTCTCACATTGCCATTCTTCACAAAGGTCTTCACATATCTTAGCTTTTACAAGGATCTTCAATCGTTAAGTGTTTCAGAGTAAGAGAAGCTTTAAGATTAGGCATCCTTCTAACTACTTGTAGATGGTTCTTTTGGGAATTAAAAGTTGGatcttcaacaaaaaaaaacatttctggtCAATTTGGCGCCAATATTTATGTAGACCCTCGTTCTGTTAAGAGGTTCTGAAAGAAAGAAACGATTCTGCTTGATTAAAGGGGCTCAGATCTTATTCCTTTTTCAAATACATTACAAATCGTTAAGAAACATTGTTTAGAACATTGTTTCATACTATTAGTTACATCCAGAACTCTAAAATCCACACAAGCAACCTTTAAAACGTGTTTCTTAATCACACTGTTTTAAAGAGTGAACCCGATCAAGTGCTACTCTTACTCAAACACACTTAATGACTGTAGGTCTGCTCTGAATTTTAGACTGTACAGGAAAtcaaaatgtagaaaaacagacagactgtACAAATCATGTtcaccatttctcactcacccatcactttgttttatgttttctcaTTTGACTCGGGTCTCCCATTGACCAACCAGTTGGAACCACTCCACATGGGAGAATGACAGCTGGATATGTCTATAGTCCCATTGACCCTTAAAACTATGACTCTGTCTCAAtgagattaatttatttttgtatttatttattaaaacaaattaaaccaaAA

Function

symbol description
snrkb Enables protein serine/threonine kinase activity. Acts upstream of or within hemangioblast cell differentiation and protein phosphorylation. Is expressed in brain; neural tube; pronephric tubule; and trunk vasculature. Orthologous to human SNRK (SNF related kinase).

NR:

description
PREDICTED: SNF-related serine/threonine-protein kinase-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683879.1 True 5861 mRNA 0.45 5 25412186 25452091

Neighbor

gene id symbol gene type direction distance location
ccdc113 NA coding downstream 134426 25270141 ~ 25277760 (-)
drc7 NA coding downstream 181175 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 261197 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 501413 24904570 ~ 24910773 (-)
LOC103044011 NA coding downstream 581223 24813330 ~ 24830963 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 44210 25496301 ~ 25572271 (-)
LOC103040521 NA coding upstream 229139 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 640079 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 644714 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 792157 26244248 ~ 26246421 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding downstream 112494 25279365 ~ 25299692 (-)
G207874 ckap5,LOC108269026 non-coding downstream 218513 25191237 ~ 25193673 (-)
G207881 ckap5,LOC108269026 non-coding downstream 245508 25153628 ~ 25166678 (-)
G207781 NA non-coding downstream 366569 24962572 ~ 25045617 (-)
G207768 NA non-coding downstream 465658 24897302 ~ 24946528 (-)
G207934 NA non-coding upstream 12450 25464541 ~ 25467095 (-)
G207938 NA non-coding upstream 102156 25554247 ~ 25557367 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding upstream 123977 25576068 ~ 25582312 (-)
LOC111195755 NA non-coding upstream 400814 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 441049 25893140 ~ 25894477 (-)
G207903 NA other downstream 59512 25317002 ~ 25352674 (-)
usb1 NA other downstream 152019 25251235 ~ 25260167 (-)
G207772 NA other downstream 463335 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 883119 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1391872 23938925 ~ 24020314 (-)
G207940 NA other upstream 140540 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 467129 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 537347 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 627673 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 634560 26086651 ~ 26088415 (-)

Expression


Co-expression Network