znrf1 (znrf1,LOC107589180,LOC107714072)


Basic Information

Item Value
gene id znrf1
gene name znrf1,LOC107589180,LOC107714072
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25496301 ~ 25572271 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683882.1
TATCCAATCAGAACGCAGGAGGCAGGGCGCACGTGGCCAATCGGGGCTCAGGAGGCGGGTCTTGTCGGAGAACGGGTGTGCAGAGAAAAAAACCGTAACGGCTGTGAGTGCAGGGAGCGGCGCACACTGACCTGAATCTCCGCGCTGGCGGAGAACGAGCGGGACGTGGGAAACGACGCCGATGGGAAACACGGCCAGCAACAGATGCCATGGCTGCTGGACTGCACTGTTGGTGTTGAAATATGAAGAATAAGGGAAGTAGGTTGAGAGCTGAAGCCCACCGCGGACCTGTCGTCGCTGTTAGGCTGTCATCgtgtgtgttgtgattgtgTCCTGCCCGCCCGCCTGCCTGCCGGGGGGAGACGTGTTGCGCGGTGTCTCGGCTTCGTCAGACTGCTGTGTTCGGCGGTTCTAGGGGATTTCTAGAGGATTTCAGggcttcttctcctcctctctttctcgctGGAGGTGAGCCGAGACGGTCAGGTCGCCGTCGCATGCTGGAAGATGGGCTCTTGGGTCTCTTAGCACAGCTTTGCACAGCAGCAGCTGCTCCAGACAGACTTTATTGACAGCCAGGGAGGATCTGATTGAGGACGCATTTTATTTGTTAGCTGGCTGAGCTATCCTAACAATATATAACCTACGAAATTAACATAGGTTAGCTTGTTCCtgatttgttctctttttttcatctttagtttgttatttgttgttgtttttctccCCCCACACAACAACACCAAcaccccccacccacccacacacacaacatacacacatctGCCCACGGCCACCTTGGATGGGGGGCAAACAGAGCACGGCGGGGCGGCCCCGGGGAGCCTTTCCCGGCGTGTCGACGGACGACAGCGCGGTGCCGCCTTCGGCCCACTTCGGCCACTACCGAGCCGGAGCCGGCGGAACGATGGGGCTCCGCAGCCGCTCCGTGAGCTCCGTGGCCGGCATGGGGATCGACCACAACGCTGCAGTGCCCTTCGGGTTTTACACCGCGCGGGGCGCGACGACAGACTCGGAGCGGGCTGGCGGCGGATCCGGGTCGGACTCGGCTCACGGCAACGGCTACCAGGACACAAACGGCGCGGGACATCACACGGACGGCGTGCTGTACCTGGGCTCCCGCGCCTCCCTGGCGGACGCGTTACCCCTGCACATCGCGCCCCGGTGGTTCAGCGCACACAGCGGCTTCAAGTGTCCTGTTTGCTCCAAGTCGGTGGCATCCAATGAAATGGAGGTTCACTTTATCATGTGTCTGAGTAAGCCCCGCCTCTCCTACAACGacgaCGTGCTGGCGAGAGATGCGGGAGAGTGTGTGATTTGTCTGGAAGAGCTGCAGCAGGGAGACACCATCGCCAGACTGCCGTGCCTCTGTATCTATCACAAAAGctgTATAGACTCGTGGTTTGAGATCAACCGCTCCTGCCCAGAGCATCCTTCAGACTGACCTCCATTCACTCTTACTACTGCTGAGAAAGgGCACTTTATGGACCTAAACCTGGCTATCTGGACACTGAATTaaccaaataaaacaatcaaCCTATTTATCGATTTGATCAAACCTGTGGAGATCGCAGAGCGGaaccaaataaagaaaaactacGCTGTCGAGACAACCAACACCACAACCCCACGACCCCGTCATTTCTCAAAGCCCCTCCCCCTGCCTGCCTCACTAGCTAGCAAATGGCTAACTACCCTATTCCCGCTCAATTTAATGGCCAGCTCTGGATTTTTAGCCACTAGCTGCTGTTTGTTCCTTCGGCGCCCCCTGGAGTTCGGCTCGGCCAGACACACGCACCCCCTCCCCCGCTGTTCGCCGCTCATCTCGTTATCTTTCTGTCGGAGAGGAAgatgaggatgaagaggagTTTATGCTAAAAAGGATGAAGGGCTCGCGGCTGCCGATCACAGAGACAGGGCCGCGCTCCTCACCGACCAGCCTGATGGCTATGGGCTTCATTAGCCTGAAAATGCTAATTAGATGGGCGTGGCTTTGTGCTTCATGTTGTCCTTATTTAGGAATGCAGGAGGTGGAGGCGGAGCTAAGTGTAGAAACATACCTGGGGTAggggtttagtgtgtgtgtgtgtgtgtgtgtgtgtttattcagtGTAAAAGCAGATAGAGcgctgaactgtgtgtgtgtgtgtatttgtgtgttgagCGGTAAGTTAAGTTTACTGTTGGGATGAATGTAAGAGTTTACACTTTTTCCTATGTGAAAAAGGTCAAATGATTTGGAGTGGGGAAacgtgcattgtgtgtgtgtgtgtgtgtgggagattGGGAATTGGAACGaggaggttgtgtgtgtgggtgtgggtgtgtgtttttcaaatgtttacagtttacagtagaTGTCTTTTACCTCCTCAagtcaaaaaaaaagtctaaatcaCTCATAGGCTGTTTCTGCTTTTCTGTTGGTCATTACAAAGTGCTGACCATATTATTCAAAACAGTCTCCCTGTAAAGGCCTtgagtgtgtttactgtgtgtgtgtgtgtgtatgtgtgagtgtgtgttagggtgtgagtgtgtgtagccAGAGCTTTGGCCTACATCCCCAACAATCTTGTTTTCAGTTTCGAGAACGGCCAGTCCGCTCCTGCAAAGTTGCCGATGCTTCTCGGCTGGATGTACTCACCCCCGACAGACGgatggacggacagacagacagacagactggtgtGAAACTAGTGCGAGATATGATCTtcctttactgttttctttctgaACCTGTGAGAAAGCTCAcaacatacaaacacaaaccTTCTATTTAATCTCCTGGATGCCTCTGCTGTATAAAGAACATCCACTGTTAGAAACAAAGTCATGTTgtgagaaaatgtaaaacagaaaaaaataaccagGAGTGGGAAAATCAATCTGATGAATGATTATCTTTTGTTAGATAGAAATAGAGCTTTTTTTCCAAGGGTTGTCTCTGATTCACGTCTGAAAACGAGGGCAAACAAACGCCATCCATCAAAAAACCACGGACAGCAGATTCTGCCCGGAAGAAAACGgcgcagagaagcagaaatgctGAGCTGGACTCCACACCCCTCACTTTCTGCTTTCCTCTGGTTCATttgggtttaattttttttttgttgttgtttaatttcttatttttccttttccaAGGATGTGAATGGATGCCTGTTTTTAGGATGTACAAACTTAATTGTCTGATGAATTTGATGTGCAGTCTGTGGGCTgagtaataatgataatgatatatataattaaaaaagataaaacatga

Function

symbol description
znrf1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein K48-linked ubiquitination. Predicted to act upstream of or within protein phosphopantetheinylation and protein ubiquitination. Predicted to be located in endosome; lysosome; and membrane. Is expressed in nervous system; neural tube; and pectoral fin. Orthologous to human ZNRF1 (zinc and ring finger 1).

NR:

description
E3 ubiquitin-protein ligase ZNRF1

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683882.1 True 3289 mRNA 0.51 5 25496301 25572271

Neighbor

gene id symbol gene type direction distance location
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 44210 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 218541 25270141 ~ 25277760 (-)
drc7 NA coding downstream 265290 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 345312 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 585528 24904570 ~ 24910773 (-)
LOC103040521 NA coding upstream 108959 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 519899 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 524534 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 671977 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 1041591 26613862 ~ 26640223 (-)
G207934 NA non-coding downstream 29206 25464541 ~ 25467095 (-)
G207928 NA non-coding downstream 54146 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 65978 25430004 ~ 25430323 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding downstream 196609 25279365 ~ 25299692 (-)
G207874 ckap5,LOC108269026 non-coding downstream 302628 25191237 ~ 25193673 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding upstream 3797 25576068 ~ 25582312 (-)
LOC111195755 NA non-coding upstream 280634 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 320869 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 331636 25903907 ~ 25917560 (-)
G208008 NA non-coding upstream 434949 26007220 ~ 26013616 (-)
G207903 NA other downstream 143627 25317002 ~ 25352674 (-)
usb1 NA other downstream 236134 25251235 ~ 25260167 (-)
G207772 NA other downstream 547450 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 967234 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1475987 23938925 ~ 24020314 (-)
G207940 NA other upstream 20360 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 346949 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 417167 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 507493 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 514380 26086651 ~ 26088415 (-)

Expression


Co-expression Network