LOC103040521


Basic Information

Item Value
gene id LOC103040521
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25681230 ~ 25685611 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683890.1
AGTTTTACCTCCTGATAGCCCTCAGTGTCCTCCATCCTGCTCATCTTCCCTAATAAACATGAAGTTATCATTATTCTCCATGTGGGCAGCAGCCCTGCTCCTCACCTTCTCCTCAGAGtgtgtgagtgggaagcagtgtgtgtgtgagctgaagAACGCAGTGCGTCCGTTCCCCACGGCTCAGCTGGACAACATCCACACTGCAGCCTCCGAATGCAACACCAGCATCACTTCAAAAcagATGCTGGAGGTGGACGTGCTGAAGCTGGGGCTGCAGCGcaggctggagcagctggaggagAGCGTGGCTGTGCTGGAGAGGGAGGATGATGGGGAGCTGTATGGAGCCGTGTCTCTGCGCATTATTGAACTGGAGCTGGCTGAGGTGCTGGAGCTCATGGCCAAACTCAACAGAACCATCAGCTCCCACCGGCAGCTCAGCAACAACACAGCCGCGAAGCTGCacagtctggtggaggagatgcaGGAGCTGGAGGAGTTTGATCACATGCAGGTGGTGAAAAAGCAGCAGGAGAATCAGAGAATGAGGCGAGACCTGGACAACTGCCAGCACCAGCTTCACTCTACTGCTGAGCCTCCAACACCTCCACCAGGAAACTGCCCTCAAGGTCAGCTGGTCAACGTCTCAGGGCCTAGAACATACACCCTCACCCAGTACGGCACCTCCTACTCTTTTGGCGCCTGGGGGAAAGACCCTAATCCTTCTCCGGGGAAGGAACAAGTGTACTGGCTGGTTGCGCTCACCAGCAGCAACATATTTTCTAACTACATCCGTGAATACAACAGCCTGAGCACCATCATAGTTGGTGTGGGGCCCACAGACACAACCATCGCACCGTCTAACCCCACCACCAACACCATCCAGGGCCCCAACGTGGTGATGTACGGAGACGCTGTGTACTACAACTGCTACAACTCACCATCCGTCTGCCGCTTCAACATGACCTCACGCACGGTCACCAATGTGGCCCTGCCCCTCAACTCAGGGTACGGCAACAAATTCCCATTCGGCCACATGGATGGCACCTACACCCACACGGACATGGACTTTGCCACAGACGAGTCTGGTGTCTGGGTCATCTACTCTTCACCTGAAAACTTCGGTAACATCATTATTAGCGAGGTGCTAGCTGGTTCTCCTCCAGTTCTGGGTAGAAGTTGGAGGACGTCTCTCCACAAGCGCACGGTCACCAACACCTTCATGGTCTGCGGCGTGCTCTACGCCACCCGATTCCTCAACAAAGAGACGGAGGAGATCTTCTACTCATTCGACACGGAGACGAGCACAGAAAGCTACAGGCTGAGGATCCACATTAAGAAGATGCAGCCCAACATCCAGTCGCTGAACTACAACCCAGGGGACCGGATGCTCTACATGTACAGCGACGCCCACATCCTGTCATATGAAGCCGTTTTTCAGTGACCTGTTATTTTTACTTATATGCGccaatatgtttaaaacagtttccTTCAATGAGCTCATTGTTTTTTATACCTGTTAGATGCTGAATAAAAGTCTATACAGCACTGTATCTCTGAAATaaaacatgctaatgctaaatatggaatttttgtatattttaagtagtgatttcatgtgtgtgtatgagttcATTGATTTTACTTCTGGGACACAGCATCAGTGTATGAAACACTGTACTGCTATATCGctgaatgctaatgctaataaacattttacatggGCTTTGCTTAAGTCGTAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683890.1 True 1742 mRNA 0.51 5 25681230 25685611

Neighbor

gene id symbol gene type direction distance location
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 108959 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 229139 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 403470 25270141 ~ 25277760 (-)
drc7 NA coding downstream 450219 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 530241 25143991 ~ 25150989 (-)
LOC111195867 NA coding upstream 406559 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 411194 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 558637 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 928251 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 987995 26673606 ~ 26715253 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding downstream 98918 25576068 ~ 25582312 (-)
G207938 NA non-coding downstream 123863 25554247 ~ 25557367 (-)
G207934 NA non-coding downstream 214135 25464541 ~ 25467095 (-)
G207928 NA non-coding downstream 239075 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 250907 25430004 ~ 25430323 (-)
LOC111195755 NA non-coding upstream 167294 25852905 ~ 25855561 (-)
G207964 NA non-coding upstream 207529 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 218296 25903907 ~ 25917560 (-)
G208008 NA non-coding upstream 321609 26007220 ~ 26013616 (-)
G208011 NA non-coding upstream 329136 26014747 ~ 26015003 (-)
G207903 NA other downstream 328556 25317002 ~ 25352674 (-)
usb1 NA other downstream 421063 25251235 ~ 25260167 (-)
G207772 NA other downstream 732379 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 1152163 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1660916 23938925 ~ 24020314 (-)
LOC111195756 NA other upstream 233609 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 303827 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 394153 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 401040 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 417876 26103487 ~ 26117632 (-)

Expression


Co-expression Network