LOC103031232 (arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000)


Basic Information

Item Value
gene id LOC103031232
gene name arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26613862 ~ 26640223 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683916.1
ATGTCACAGTTCCTCGCCCGCCACCGAGAAGCCCTGCCACCCTGCCACCCTGCTGCCCAGCCGCCCGGCCAGCCTGCCGCCCTGCCAGCGACTGTGATGCGTTTCATTTCTCCGGTTGCTGCTGGCATTGTGTTGAAAACAGCCCTCTGAATCAATTTGtgATGATCTAATGGCAGACCAAAGAATGGACATCTCCTCCACAATGAATGATTTCATGTCCCCAAGCTCCACAGACCTCATCAGCAGCTCTGTGGGCACACCGGGCATGGACTACACCCGCAAGAGGAAGGGAAGTGCCACTGAGTACCAGATTGATGGGTTTTCATTTGATGACAGTATGGACACAGAAAAGGATAAACAACTTGGGAGaGACGACCAGCATGGACGGATTAAAAATGCCAGGGAAGCCCACAGTCAGATTGAAAAAAGGCGTAGGGATAAGATGAACAGTTTTATAGATGAATTGGCTTCTTTAATTCCTACATGCAATGCCATGTCTCGCAAGCTGGATAAGCTGACGGTGCTCCGGATGGCTGTGCAACATATGAAGACGTTGCGAGGTGCTACTAACCCATACACAGAAGCAAACTATAAACCAGCATTCTTATCAGATGATGAACTAAAGCATTTGATATTAAGGGCTGCTGATGgctttctttttgttgttgggTGTGACCGGGGCAAGATTCTCTTTGTCTCAGAGTCTGTTTATAAAATTCTCAACTATAGTCAGAACGACCTGATTGGCCAGAGTCTGTTTGACTACCTGCATCCGAAGGATATTGCTAAAGTGAAGGAACAGCTGTCTTCTTCTGATACAGCACCACGAGAACGACTCATTGATGCCAAAACTGGTCTGCCTGTGAAGACTGATATCACTCCTGGACCCTCCAGGCTGTGTTCAGGCGCTCGGCGTTCATTCTTCTGCAGAATGAAGTGCAACCGGCAACCGTCCGTCAAGATGGAGGACAAAGACTTTTCCTCCACCTGCTCCAAGAAGAAAGCAGACCGCAAGAGCTTCTGCACCATTCACAGCACTGGCTACTTGAAGAGCTGGCCGCCCACCAAGATGGGCCTGGATGAGGAAAATGAACCTGACAACGAGGGCTGTAACCTTAGCTGCCTGGTGGCCATTGGCCGCCTGCACCCTCACATCGTCCCCCAGCCTATGAACGGAGATATCCGCGTCAAACCTACCGAGTATGTCTCTCGCCACACCATTGATGGCAAATTTGTCTTTGTGGACCAGAGGGCAACAGCCATTTTAGCATATTTACCTCAGGAGCTGCTGGGAACGTCGTTCTATGAGTATTTCCATCAGGACGACATCGGCCATCTGGCCGAGTGCCACAGACAAGTTCTTCAGACTAAAGAGAAGATCAGCACAAACTGTTACAAATTTAAGATTAAAGACGGTTCCTTCATCACTTTACGAAGCCGCTGGTTCAGCTTCATGAACCCCTGGACCAAAGAAGTGGAATACATCGTCTCCACCAACACAGTGGTCTCGGGCAGCGTACTGGAAGGAGCCGACCCCAGCTATCAGTCCGCTGCCTCCCCTCAGAGCATGGACAGTGTGCTCACTTCTGAAAATGGTGGAGGGAAGCGGCCTCTCCAGACTGTCCCAGGCATCCCGGGTGGGACACGGGCCGGGGCTGGGAAGATCGGCCGCATGATTGCTGAGGAGGTGATGGAGATTCAGAGGATTCGTGGATCCTCTCCCTCCAGCTGTGGTTCCAGCCCCCTCAACATCACCAGCACTCCCCCTCCTGACACCTACTCTCCAGGGGGCAAGAAAATTCAAAATGGAGGCACCCCTGACTTGCCCTCCAATGGAATTGTGTCTGGTCCGGACTCCATAGGATACCCGTACTCCAACAACTCCATAATGAGTGACAACTCCCACTTGAGCATTGACATCATGGATGAGCCTGGCTCCAGCAGTCCCAGCAACGACGAAGCAGCCATGGCTGTCATCATGAGCCTTCTGGAGGCTGATGCTGGCCTGGGTGGGCCTGTGGATTTCAGTGACCTGCCCTGGCCCTTGTGAGAACAGCTCAGCAGTCTGATCCTCATCCAGTAACTGCAGTTGTACCGACTGGATCTAAAATCTAGCCCAAACAacctaaaaa

Function

symbol description
arntl1a Enables transcription cis-regulatory region binding activity. Contributes to DNA binding activity. Acts upstream of or within several processes, including photoperiodism; regulation of transcription, DNA-templated; and regulation of vasculature development. Part of transcription regulator complex. Orthologous to human ARNTL (aryl hydrocarbon receptor nuclear translocator like).

NR:

description
PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1

GO:

id name namespace
GO:1901342 regulation of vasculature development biological_process
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02296 ARNTL, BMAL1, CYC; aryl hydrocarbon receptor nuclear translocator-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683916.1 True 2132 mRNA 0.52 19 26613862 26640223

Neighbor

gene id symbol gene type direction distance location
LOC111195836 NA coding downstream 367441 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 514035 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 518671 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 928251 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 1041591 25496301 ~ 25572271 (-)
cep290 cep290 coding upstream 33383 26673606 ~ 26715253 (-)
kitlg NA coding upstream 152539 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 306071 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 311466 26951689 ~ 26953473 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 386271 27026494 ~ 27233590 (-)
G208357 LOC108439330,LOC107665709,LOC105895626,LOC107753524 non-coding downstream 25472 26586222 ~ 26588390 (-)
G208356 pigy non-coding downstream 99572 26509250 ~ 26514290 (-)
G208344 NA non-coding downstream 142280 26471223 ~ 26471582 (-)
G208329 NA non-coding downstream 195414 26417721 ~ 26418448 (-)
G208307 NA non-coding downstream 251499 26362086 ~ 26362363 (-)
G208390 NA non-coding upstream 5449 26645672 ~ 26645939 (-)
G208392 NA non-coding upstream 8254 26648477 ~ 26648687 (-)
G208395 NA non-coding upstream 16266 26656489 ~ 26657416 (-)
G208417 NA non-coding upstream 149417 26789640 ~ 27220851 (-)
G208438 NA non-coding upstream 200066 26840289 ~ 26871460 (-)
G208046 NA other downstream 401021 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 496230 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 525447 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 527358 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 621368 25989438 ~ 25992494 (-)
G208394 borcs5,LOC107753635 other upstream 15220 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1576172 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2021960 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2142860 28783083 ~ 28860774 (-)
G209090 NA other upstream 3383738 30023961 ~ 30024550 (-)

Expression


Co-expression Network