LOC111195765


Basic Information

Item Value
gene id LOC111195765
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27108299 ~ 27111038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683917.1
GTCTGTCCCAAAACCTAGGGAGCTCTCTATGTAGGCACTGACTACGTAGACAGCTGTTTAACTAGACAGCGTTCTAACCGCCATCCAGCCTTATAAGACACATTATTGGGACTCTCTAGTTAGGCAGCGACTGCGTCACGacttggccccgcccacagCACGCGCCCACTGTTTACTTACCTCAGCCGCGGGAACCACCTCATCACCCTACCGGCATTATGGACGAACCTCTTGccgtttttattgcatttttaatagtttttgcgCTGGAGGAAGAGCGACAGAGACGTGAGAGCCGACGTGCTGCAGCCAGACACCGACATTTAAGAAGAAGAGCGCTGATTTCTGCACTTGAACAGGGAGAAAGACCTTCAAGATACTGTTCTCTGAATACAAGTGTACCACTTTTGAGAATATTTCTGGACGACACCCAAGACACCAAGCCTGACTTTCGCCTGAGCCGTGAATCCCTGAAAGTGCTTTTTCAACTTATCAAGCACGAAGGCACCCATGGTTGGGGGGGGACCATTGAGgtgttagtttttcttttttggttggCCTGTGGCACATCATACCGCGTTGTTTCCCGTGCTTTTGCTATGCCCCGTTCTACAGTGCACCGTGTAATTCACAGAATGGCCAGTGAAATGCGGCAAATCCTACCCAAAGTTATCCGGCACCCAAAACCCGAAGAACTGCAGAGCATCTCTGATGGCTTCGTGAGGCTGGGAAACCATACAGCTTTTCACTCTGTAGTGGGTGCCATAGATGGGTGCCATGTGCGTATCAAAGCCCCTGGAGAACCTGATGCACAGTGCTACAGAAACCGGAAGCTCTACCCCTCTGTGCAATTTCAGGCTGTCTGTGACCACCAGGCAAAGTTTCTGGATGTTTTTATTGGCTTTCCTGGCTCAGTACATGATGCACGGGTGCTCCGTCACAGCACTCTGTATCGGCAGGCCACTTTCCCACCCAGGGGCTACATGATACTTGGTGATGGTGGGTACCCATGCATCTCTCAGCCCATAGCCCTCATCACTCCATTCAAGAAGCCTGTCAGAGGAGAAGAGAGGGTGGCCTTCAATAGGCATCATGCAAGGGCACGTTCTATAATTGAACGTGCTTTTGGGATGCTGAAGACCAGATGGAGGTCAATTTTCCTGCATGCCCAAGAGGTAAATCCAAGGTTTGTGCCAGAGGTGATTGCTGCCTGTGTCACTCTGCACAACATCTGCATGGGAGCGGGAGATGTTGTTCAGCCTGAGGAGGAAGcagatgaagatgaggaagcTGATGTGCAGGAAGAAGACATCACAGCTGTCAGTGGCCACCAATTACGAGAGCAACTTTGTGCCAACATTGCTGGTGTCCAGTAATTTTATCAAACTGGAAACAAATAGATCAGTTCGGTTTTCATTAACTGTTACATTtgcactgtaaatattttttatgtaaatattgtataagcctcaatcatttttgtttaatgttctaGTTTAAAATGTCTTATTCCATTGTCTTATTTGTGCTACTTTAAACCAGTTCACTTGTTCTACTCACTGTTAATATTAGTCTTGTTCTGTTAGTgtgtttagaataaaaaatgcacTTCAAGAGTATGAATTTCAGCAAGTGTTAATCTACAACGAACAACCCATTAAGTAAATTTCAGTATAGAATACCTGCAAGGCATGCATTAGTTTACCatgactgctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683917.1 True 1716 mRNA 0.46 2 27108299 27111038

Neighbor

gene id symbol gene type direction distance location
LOC111195857 NA coding downstream 154826 26951689 ~ 26953473 (-)
LOC111195856 NA coding downstream 158929 26946294 ~ 26949370 (-)
kitlg NA coding downstream 292840 26792762 ~ 26815459 (-)
cep290 cep290 coding downstream 393046 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 468076 26613862 ~ 26640223 (-)
LOC111195771 NA coding upstream 34998 27146036 ~ 27152300 (-)
tmem231 tmem231 coding upstream 1045729 28156767 ~ 28163353 (-)
adat1 NA coding upstream 1066102 28177140 ~ 28193065 (-)
nup160 nup160,LOC107555692,LOC107756876 coding upstream 1199828 28310866 ~ 28367957 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 1361483 28472521 ~ 28476854 (-)
G208487 NA non-coding downstream 97187 27008167 ~ 27011112 (-)
G208481 NA non-coding downstream 116371 26991493 ~ 26991928 (-)
LOC111195768 NA non-coding downstream 151849 26954767 ~ 26956450 (-)
LOC111195769 NA non-coding downstream 156975 26950914 ~ 26951324 (-)
G208455 NA non-coding downstream 214249 26885476 ~ 26894050 (-)
G208518 NA non-coding upstream 54138 27165176 ~ 27181579 (-)
G208519 NA non-coding upstream 57740 27168778 ~ 27170164 (-)
G208520 NA non-coding upstream 59715 27170753 ~ 27174391 (-)
G208521 NA non-coding upstream 60125 27171163 ~ 27173252 (-)
G208527 NA non-coding upstream 95772 27206810 ~ 27207649 (-)
G208394 borcs5,LOC107753635 other downstream 452115 26655443 ~ 26656184 (-)
G208046 NA other downstream 895458 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 990667 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 1019884 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 1021795 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1105357 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1551145 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1672045 28783083 ~ 28860774 (-)
G209090 NA other upstream 2912923 30023961 ~ 30024550 (-)
G209127 NA other upstream 3051419 30162457 ~ 30162973 (-)

Expression


Co-expression Network