kitlg


Basic Information

Item Value
gene id kitlg
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26792762 ~ 26815459 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683919.1
AAAAAacgcgctcacacacacacacactcgcacactcactcttacacactcgCCGAGTGTCCGAGCCCCGCCGTGCGTTATGAAGTGCGCGCCTGGATAAGCAGACCTGCCTGTGCTGAGCTGTGCTAAGCTGTGATGTCCTATGCTGAGTGTCTTCTTTGCTTCTTCACTTTGGATTTTAATTAGGATGAGTTTGGATATGCGCAAACGGGATAAAGAGAAGCCTTTTCCTGCCCgcagaagtaaaataaaatagggtTTCGTCGACACTGGAGTTAATCCTCTCATTCCCTATGAAGAAGTCAAAAATTTGGATACGCACCTGTGTCCATTTATTACTCTACATCACAGTTGCTGCTTATTCCAGGGAAATTGGAAACCCCATAACAGATGACATCAAGAAGATTTCATTGCTGAAGCAGAATATACCAAAAGATTACAAGATCACAATCAAGTACTTACCTGAAGAAGTGAGTGGAACGTGCTGGGTGAATCTAAATGTATTCCACTTGGAGGAGAGCTTAAAAGTCCTGGCCCAGAAGTTTGGGAATATTTCCTCCAATAAAGACAATATAGAGACTTTTGTCCAAATGTTGCGTGAGATGCGGTTTCATATTGGACACACCTTGGAGGATGATATGCAGCAGTTTGAGTGCCACTACAGAGAGGAGAAGTGGCTAACAGCACGCTACTTTGAATTTGTGGAAGGCTTTTTCAATACTGCCAATTCTTCGAGAGAAGAGGCAGGCTGTGATTCCCCCCCTTGTcccacaacaacaaaaacaacaatatcaACAACAGTAACAGCATCAGTGACACACCATCATTCACGAGGTAGTTCATTTGCACAGAACAGCACTGCAGAAAAAGAGGCTACAAATCAGAGGATTCTTCCAGAGGTGTTGGAGAGGAGcctcttgtctcttctctttattCCTCTCATTGGTGTGGTCTTCCTGCTCATCTGGAAGGTGAAATCCAGAAGAAATGACCCACCCGTGCAAAGGAGTTCAGAAGGCCCTCCGCTGTTTATTGGAGCTGAAGCCAGCGCGCCACCATTAGATGACATATCAGAAAAGAACAGATTAACCTTGGTCAGAGAGGTTTAAATCTTCAGTCTTCGCTGTCGACAGAAGAGAGATACTCTCAGCTGCAAGGGACATGTGCTGGCCTCAAACAAAAGAACTGCCCATTGAGTTTCAATGCTTTTTCTAAGAACAGTGACTGGACCTTTTTTTGGAAGGTTGGGTGGGGGTTTGGTGGGGGAGAAAAAGTGACAATGTCACGGTCAATGTATGGCAGGCTTGTTTTTCCACCTGAGGATTTGCTGACCACCACCATGAAAGCAACAGGAGACTGTGCAGGAAGATTGCAGCACGTTGCACTGTATTGCAGTGCACAGAGATCCTTTGGCCTTTCTGGAACCATCTGGAGGTGTGGCACACTGAAATGAGGACTGCAAAACACGTTTCTGCCTGATGTGCTTGCGAGTTTGGGGCCCGGCGCCAAATGGGCCTGAGCGTTCCTGAATAAGCTGGAGGGAGTGGAGCAAGAAATGACTACCTCCAGTTTACGTTGGTCCTTTTGCCTCCTGCGTCATCTGTCGTAGAGCTCTGTCGCTCTTGGTTTGGGCATCCAGCTAGACACTGCTTCATCCTTGAGTGATTTTAATCAGTAAAGATCTTCTTCTGTAACTGTATCATCTGAATTGtgtatcatttttattgttacttAACTGGTGGTGtggacttaatttatttattttctgattatGTGTCTGCAAGAGAATTTGCTGCTCCTGCATGGAAATGTATAGTGATTAAGAAGATCTTGTGGACAAAACACTACATTTGTATGCCATAATGCTTAACTGCACCTCTGCTGCAACCATCAAGCTAACTCTAGTTAACCCTTGAGTTTTAAACTACTGTTTAACACTTCTCAAGACTTCTGCCGATATTTACTTGATGCTTCCCATTCACACAATTTCcttcataatatatataatcataaaaaaacatttttgttttcatttgatacttCTCTGAATCTATGTTTGCAGTAGGCCTGAAGTTCAGAACCCCCCTGTGATTCAGTTCCTTTGGACATGATGTCACTACTATGAATCttctttcagtgttttaaaatcatGTAGAAAATGGCTGCTAATCGTATAGAACATTCAGCGTTgggttttgttgtttgttttttatgggAATCAATTCTGTGTTCTGTTCCTAATAGT

Function

NR:

description
kit ligand precursor

GO:

id name namespace
GO:0030318 melanocyte differentiation biological_process

KEGG:

id description
K05461 KITLG; KIT ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683919.1 True 2245 mRNA 0.43 10 26792762 26815459

Neighbor

gene id symbol gene type direction distance location
cep290 cep290 coding downstream 77509 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 152539 26613862 ~ 26640223 (-)
LOC111195836 NA coding downstream 546341 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 692935 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 697571 26092170 ~ 26095191 (-)
LOC111195856 NA coding upstream 130835 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 136230 26951689 ~ 26953473 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 211035 27026494 ~ 27233590 (-)
LOC111195765 NA coding upstream 292840 27108299 ~ 27111038 (-)
LOC111195771 NA coding upstream 330577 27146036 ~ 27152300 (-)
G208395 NA non-coding downstream 135346 26656489 ~ 26657416 (-)
G208392 NA non-coding downstream 144075 26648477 ~ 26648687 (-)
G208390 NA non-coding downstream 146823 26645672 ~ 26645939 (-)
G208386 NA non-coding downstream 157222 26632153 ~ 26635540 (-)
G208357 LOC108439330,LOC107665709,LOC105895626,LOC107753524 non-coding downstream 204372 26586222 ~ 26588390 (-)
G208438 NA non-coding upstream 24830 26840289 ~ 26871460 (-)
G208445 NA non-coding upstream 43952 26859411 ~ 26863216 (-)
G208446 NA non-coding upstream 46182 26861641 ~ 26881461 (-)
G208447 NA non-coding upstream 47927 26863386 ~ 26868253 (-)
LOC111195767 NA non-coding upstream 53694 26869153 ~ 26870117 (-)
G208394 borcs5,LOC107753635 other downstream 136578 26655443 ~ 26656184 (-)
G208046 NA other downstream 579921 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 675130 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 704347 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 706258 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1400936 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1846724 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1967624 28783083 ~ 28860774 (-)
G209090 NA other upstream 3208502 30023961 ~ 30024550 (-)
G209127 NA other upstream 3346998 30162457 ~ 30162973 (-)

Expression


Co-expression Network