tmem231 (tmem231)


Basic Information

Item Value
gene id tmem231
gene name tmem231
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28156767 ~ 28163353 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683924.1
GTTCGCTTTCTGTTTCCTGGAGGCGGTCATGGTAACGCTGGGACGCTTCGCTTCAGGAGCAGTtaccgttagcattagcattagcatggcTTTTAAACCCGAATTAGGCACTGCACGTCTGCGGCCGAACTGAtagatacagtacatttaatcCGAATTAAATACGAGAGAAACCGATTCTACAGCACACAACACACCTTAACACATCTCCATTACAGCTTAACCTTAACCAATGCTAACCAGAACAGCCCCACTGTTATTTCTCAGTAGGTTTTAACTGTTCTTCAGAGCGAGTTTAGAACTGTTCTTCAGAGCGAGTTCAGAACAGCGAGGAGGGTTTCAGTGATGGCTTTTTATGAAGTGTACTCCCACCCTGCTTTAATAAGATATAAAACCAATGTGTGTACTCGCGCCACCCTGTTCGTGCTGATGGTTTTCTGTCTTACGTACATCCCGCCACTGCTGGTCGCCTACAAGAGCCAAGGATTCTGGCTGAAGAGAAGCACATATGAGGAGCAGCCGGTTGTGCAGTTCCAGTACCAGATGTTAATGATTGGAGCCACTGGAACAGCAGGAGAATTTGTGGCGTGGAGCACTTTTCCTGACTTTAACCGTCTGCTGGGAAGCAACCTTCGCATCCCTGCAGTGTCTGTCAAGGAGGAGGACAGCAATCAGGATGGAAAATCAGACCGGCTGCGTCTCCAGCTCAGTGTTCCACTGAAAGCAGAAGAGCAGATTTACAGCATTCAGCTACTCCTCACCTTCTCATACCAGTTGTTTCGGATGTCCACTGTAGTGATGCAGTCTATGGCCTTTATTCAGCACTCCTCCTCCGTTCCTGGATCACAGCTGTTCATCAATGGGGACCTGAGGCTCCACCAACAGATCCCACTGCCACACAGAGGTCTACATGCTGCCTACAATGTGTCAGTGGTCGAAACAGGGAGTCCCTTCGCTACTTCCTATGACTTGGCCAGCATCATCAGAGCCTATCAAGCAAGAAACTtgacgACATATCTCTCCTGTCCGACTCCAGTATGGATCATTGGTCGAGCTGTAAATGCTCCTTTCCAGATTAATGCAGAAGTCCGCTACCCACTAGAAACTATCAGCTATCGGCCTGGGTTCTGGGAAATGATAAAGTTTGCCTGGATCCAGTATGTCAGTGTTCTGCTCGTGTTTCTGTGGCTTTTTAACCACATCCAGACGTTTGTCTTTCAGAACCAGGTTCTGCCCACTGTACCCAAACCCCTGCTCAAAACACACACGCAGTGACCcacactgtttgtgtgtgggagtgtgggagtgtgtgtgggagtgtgtgtgggagtgtgtgtgggagtatgtgtgggagtgtgtgtgggagtg

Function

symbol description
tmem231 Predicted to be involved in cilium assembly; regulation of protein localization; and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in cilium and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary membrane and ciliary transition zone. Is expressed in blood; median fin fold; and periderm. Human ortholog(s) of this gene implicated in Joubert syndrome 20 and Meckel syndrome. Orthologous to human TMEM231 (transmembrane protein 231).

NR:

description
transmembrane protein 231

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0036038 MKS complex cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19362 TMEM231; transmembrane protein 231

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683924.1 True 1368 mRNA 0.49 7 28156767 28163353

Neighbor

gene id symbol gene type direction distance location
LOC103031696 ano1,LOC105911290,LOC106573096 coding downstream 923177 27026494 ~ 27233590 (-)
LOC111195771 NA coding downstream 1004467 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 1045729 27108299 ~ 27111038 (-)
LOC111195857 NA coding downstream 1203294 26951689 ~ 26953473 (-)
LOC111195856 NA coding downstream 1207397 26946294 ~ 26949370 (-)
adat1 NA coding upstream 13787 28177140 ~ 28193065 (-)
nup160 nup160,LOC107555692,LOC107756876 coding upstream 147513 28310866 ~ 28367957 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 309168 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 320138 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 439537 28602890 ~ 28622098 (-)
G208551 NA non-coding downstream 21425 28135141 ~ 28135342 (-)
G208542 NA non-coding downstream 891808 27264576 ~ 27264959 (-)
G208417 NA non-coding downstream 935916 26789640 ~ 27220851 (-)
G208529 NA non-coding downstream 946500 27208113 ~ 27210267 (-)
G208527 NA non-coding downstream 949118 27206810 ~ 27207649 (-)
G208640 NA non-coding upstream 46042 28209395 ~ 28209959 (-)
G208647 NA non-coding upstream 123179 28286532 ~ 28286897 (-)
G208649 NA non-coding upstream 127256 28290609 ~ 28292211 (-)
G208662 NA non-coding upstream 193261 28356614 ~ 28357085 (-)
G208665 NA non-coding upstream 209738 28373091 ~ 28381368 (-)
G208394 borcs5,LOC107753635 other downstream 1500583 26655443 ~ 26656184 (-)
G208046 NA other downstream 1943926 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2039135 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2068352 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 2070263 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 53042 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 498830 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 619730 28783083 ~ 28860774 (-)
G209090 NA other upstream 1860608 30023961 ~ 30024550 (-)
G209127 NA other upstream 1999104 30162457 ~ 30162973 (-)

Expression


Co-expression Network