LOC103041235


Basic Information

Item Value
gene id LOC103041235
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28668730 ~ 28683502 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683944.1
gtttagcttagtttagcgtAGCTAGGTTTAGCTTAATTTATCTTAGTGtaggttagtttagtttagcgtagtttatcatatattatttgcatttattattgGCGTGTCTGGGAGCATCCAGTGGATTTAGCTAATTTAGAAGATAAAAAGCAAATAATCTGTAGAGTTTACAGCTTCCTGTGATAACTGAAGatttgcAGATGAATAACTTTGGAGGTCCAGAGTGCAGTTTTCAAGGAGACTTAAACAGAGGGTCTTTTGTTCCTGCGTCTTTATTCCATGTTGAAATCCCAAACGAAGTCTTTTATTCAGGCTCAGTTCACCACTACAGTGAAGGACCCCCACATACCACAAATCCAGACGAGCTCGGTTATCCCAGACTGGATAATGATTTGGGCAAGTCCAGAATGTACTGTGACCCATTGTCCCAGTGCCCCCTTGTTCCGTATCCTGATTACCTGCTATGTCAAGCCGCACCATATCACTTTATGAATCCACCGGTGGGCCTCTGTAAAAACACGCTGTCCACTTGGACACCTGAAGAAGCTTTTCCTTATTGGATGACTTCGGCAGAGATGCACGAAGGTGTTGCCAGCATTACCTCAGAGGGAGCAGACGAGCACTGTAAACAGACCTGTTCCAGACATGAGTCTGTCActgagcttctggacatgggcCACAATgtTGTGTGTAACGTAAATGATGGTGGACAGATGATGGTACTGAATCACTGCAGCCCAAACCAGATCATCCAACCCATGGTCCAGGACCAAAGTACACCAAATCCTGACCCCCTTCTGTACGCTGcagatcacacacactcccctgAGCGCTGTCTCACACAGGaaacagCTGATAGTCCACTACCGAAACAGGTGCAGAGGGGATTCTCCTCTCCGATGTATTTGTCCTCCCTCACCAGCTCTAATGTCCACCCATCCTCCAATTCGAATTCTTCTACTCCCAGCTACAATTTCACATTAGGGACATACATCTCTCCGAGCTCCTGCACTGAACTTCCTAAACCAGGAGGGGTGGAGTCCAGTGAGACCCAAAGTGTGCGAGAAAGACTGAAGAAGCCTTGCAACTGCACTAGGTCACAGTGTTTGAAACTATACTGTGACTGCTTTGCAAGTGGAGAAGTTTGCAGCAACTGTAACTGTACCAACTGCTGTAACAACATGGAGCACAAgtcagagagatacagagcaaTGAAGatttgCTTAAAGAGGAACCCAAAGGCCTTTCATCCAAAAACCGGAATCAGAAAGGTTGGGGATGTGAAAAGTCGTCACACAAAGGGGTGCAACTGCAAACGTTCGGGCTGCCTGAAGAACTACTGCGAGTGTTAcgagGCCAAGATCATGTGCTCCTCCACCTGTAAGTGCATTGGCTGTCGCAATTATGATGGAAGTCCGGTGAGAGAGCTCACTGGAAGGGAAACCCCCAACACCCCTGAGAACAGCTCCGGTCTGCACAAGTGTCCTCTCTCCTGCATCACGCCTGATGTTGTGGAAGCCACATGCGGCTGCCTGCTGGCCCAGGCCGAGGAGGCCGAGCGGGAAAGGCACACGCAGCCTCACGCTGAGCGAATGATTTTAGAGGAGTTTGGCCAGTGCCTGACACAAATTGTGCGTTCGATGTTTAAATCCACAGGAGTGCAGTGAAA
>XM_022683945.1
CGCCATCTGCTGTCCAGTTTAATTTAGTTCTATCAACTTCTGTCTGATGGCTTGACGAGTTTCTACCATCTCTTGGGCAAAGatttgcAGATGAATAACTTTGGAGGTCCAGAGTGCAGTTTTCAAGGAGACTTAAACAGAGGGTCTTTTGTTCCTGCGTCTTTATTCCATGTTGAAATCCCAAACGAAGTCTTTTATTCAGGCTCAGTTCACCACTACAGTGAAGGACCCCCACATACCACAAATCCAGACGAGCTCGGTTATCCCAGACTGGATAATGATTTGGGCAAGTCCAGAATGTACTGTGACCCATTGTCCCAGTGCCCCCTTGTTCCGTATCCTGATTACCTGCTATGTCAAGCCGCACCATATCACTTTATGAATCCACCGGTGGGCCTCTGTAAAAACACGCTGTCCACTTGGACACCTGAAGAAGCTTTTCCTTATTGGATGACTTCGGCAGAGATGCACGAAGGTGTTGCCAGCATTACCTCAGAGGGAGCAGACGAGCACTGTAAACAGACCTGTTCCAGACATGAGTCTGTCActgagcttctggacatgggcCACAATgtTGTGTGTAACGTAAATGATGGTGGACAGATGATGGTACTGAATCACTGCAGCCCAAACCAGATCATCCAACCCATGGTCCAGGACCAAAGTACACCAAATCCTGACCCCCTTCTGTACGCTGcagatcacacacactcccctgAGCGCTGTCTCACACAGGaaacagCTGATAGTCCACTACCGAAACAGGTGCAGAGGGGATTCTCCTCTCCGATGTATTTGTCCTCCCTCACCAGCTCTAATGTCCACCCATCCTCCAATTCGAATTCTTCTACTCCCAGCTACAATTTCACATTAGGGACATACATCTCTCCGAGCTCCTGCACTGAACTTCCTAAACCAGGAGGGGTGGAGTCCAGTGAGACCCAAAGTGTGCGAGAAAGACTGAAGAAGCCTTGCAACTGCACTAGGTCACAGTGTTTGAAACTATACTGTGACTGCTTTGCAAGTGGAGAAGTTTGCAGCAACTGTAACTGTACCAACTGCTGTAACAACATGGAGCACAAgtcagagagatacagagcaaTGAAGatttgCTTAAAGAGGAACCCAAAGGCCTTTCATCCAAAAACCGGAATCAGAAAGGTTGGGGATGTGAAAAGTCGTCACACAAAGGGGTGCAACTGCAAACGTTCGGGCTGCCTGAAGAACTACTGCGAGTGTTAcgagGCCAAGATCATGTGCTCCTCCACCTGTAAGTGCATTGGCTGTCGCAATTATGATGGAAGTCCGGTGAGAGAGCTCACTGGAAGGGAAACCCCCAACACCCCTGAGAACAGCTCCGGTCTGCACAAGTGTCCTCTCTCCTGCATCACGCCTGATGTTGTGGAAGCCACATGCGGCTGCCTGCTGGCCCAGGCCGAGGAGGCCGAGCGGGAAAGGCACACGCAGCCTCACGCTGAGCGAATGATTTTAGAGGAGTTTGGCCAGTGCCTGACACAAATTGTGCGTTCGATGTTTAAATCCACAGGAGTGCAGTGAAA

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683944.1 True 1669 mRNA 0.48 11 28668730 28681252
XM_022683945.1 False 1559 mRNA 0.49 11 28668730 28683502

Neighbor

gene id symbol gene type direction distance location
LOC103040620 LOC108443074 coding downstream 46632 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 179296 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 191876 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 300773 28310866 ~ 28367957 (-)
adat1 NA coding downstream 475665 28177140 ~ 28193065 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 10664 28694166 ~ 28701575 (-)
LOC111195773 NA coding upstream 51684 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 188338 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 335718 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 360473 29043975 ~ 29157568 (-)
G208778 NA non-coding downstream 22107 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 170047 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 170367 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 171439 28496451 ~ 28497291 (-)
LOC111195846 NA non-coding downstream 176497 28491351 ~ 28492233 (-)
G208787 NA non-coding upstream 1082 28684584 ~ 28693510 (-)
G208827 NA non-coding upstream 31808 28715310 ~ 28715632 (-)
G208843 NA non-coding upstream 82181 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 108622 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 196482 28879984 ~ 28885542 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 400361 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2012546 26655443 ~ 26656184 (-)
G208046 NA other downstream 2455889 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2551098 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2580315 26086651 ~ 26088415 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 99581 28783083 ~ 28860774 (-)
G209090 NA other upstream 1340459 30023961 ~ 30024550 (-)
G209127 NA other upstream 1478955 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1518029 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1830405 30513907 ~ 30803356 (-)

Expression


Co-expression Network