G50911


Basic Information

Item Value
gene id G50911
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 742001 ~ 745178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57933
CACACACACACAGACAGTAAACACAGCTTTCTTCTCATGCACGTTAATCTGTATATAGGAATGGAATTGTTATCGTGTGTTACCCTGTTTCTTGCCTCTGTCTGGGTTGGTGTTTTGACCATTTGTGTTCTCATGTTATTGGGCACTGTTGGTAACCCTGATGGTTCCACTGCAACCGTTCTCTTCCCTTTCCTGTTTTTCCCTGCGCCTTTCTGGAATTGAGGAGTAGGCGATCTCTCATACTGTGGTGTGGATGATCTCTCCATCTCTGATGGTCTGTGAGCAGAGCCTCCATCTGGAGGACTGCTGAGGATTGACTGTTTGACTACATCACTGCTGGGTACACTGGCATGTTGAAACCTCTTGGATCTCTCTTCCAGAAACCATTCTCCTGTAACCACCTTCAGCTCCGCAGTCTTTGCACACACGGTGCATTTGCAGTTGCTGCCTGGAGGCGTAGCAGTGCAGAAGTTGCAGATGCGCCGATGACAATTGGTACACACATTACCCCTCTGCAGGATGAGACCCAGAGCACGCAGACATACGGCACACTCACGCTGATCAGCTGAACTACGCCGCCCGGCTCGCTTCAGTTCCAGAAGTTCATTTTTCAGCTTCCTGTAGAGGCACAACCGGCATCATTGTTGGGGAGCAACTAAACGTAACAACCCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57933 True 674 lncRNA 0.31 4 742001 745178

Neighbor

gene id symbol gene type direction distance location
CI01000009_00719164_00724772 SRPX coding upstream 16950 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 31196 704065 ~ 710805 (+)
CI01000009_00620687_00621072 NA coding upstream 120464 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 124239 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 132626 608513 ~ 609375 (+)
CI01000009_00805606_00808374 NA coding downstream 59726 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 106064 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 168817 913995 ~ 916565 (+)
CI01000009_00920570_00955979 TBC1D4 coding downstream 175250 920428 ~ 956574 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 289383 1034561 ~ 1035728 (+)
G50909 NA non-coding upstream 5976 735727 ~ 736025 (+)
G50879 NA non-coding upstream 12181 728863 ~ 729820 (+)
G50876 NA non-coding upstream 13519 727073 ~ 728482 (+)
G50902 NA non-coding upstream 44161 697605 ~ 697840 (+)
G50878 NA non-coding upstream 46786 694026 ~ 695215 (+)
G50913 NA non-coding downstream 1016 746194 ~ 756171 (+)
G50917 NA non-coding downstream 11944 757122 ~ 760273 (+)
G50921 NA non-coding downstream 31106 776284 ~ 776509 (+)
G50973 NA non-coding downstream 41706 786884 ~ 787490 (+)
G50978 NA non-coding downstream 54449 799627 ~ 799859 (+)
CI01000009_00094836_00095813 NA other upstream 646214 94371 ~ 97230 (+)
G50920 NA other downstream 24663 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 677669 1429873 ~ 1435328 (+)
G51122 NA other downstream 934968 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1149057 1897343 ~ 1919516 (+)
G51274 NA other downstream 1509921 2255099 ~ 2350486 (+)

Expression


Co-expression Network