LOC103021866 (LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111)


Basic Information

Item Value
gene id LOC103021866
gene name LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30363293 ~ 30390245 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683988.1
ctctctcctcatttCACCCGCTGCTCCACAGGCAGGCAGAATCATGGCCGCTACCCCGGCAGGTCGTGTGTTGGTGTACGGAGGCAGAGGCGCGCTGGGCTCGGCGTGTCTTCACTACTTTAAGGCTAAAGGCTGGTGGGTGGCCAGTATTGATATCGTGGCGAATGAAGAAGCGAACGCGAATGTTCTGGTTAAAATCTGCGAGTCTTTCACTGAACAGGCGGAACAGGTGACATCGGACGTGGCTCGGTTGCTGGGGGAGCAGAAGGTTGATGCTATTTTGTGTTTGGCAGGGGGATGGGCTGGAGGAAACTGCAGCTCGAAAGACCTGTATAAGAACAGTGATCTGATGTGGAAGCAGAGTGTCTGGACCTCCACCATCTCCAGTCATCTGGCCTCTAAGCACCTGAAGGCTGGTGGTCTGCTCACCCTGGCTGGAGCCAATGCTTCACTGTCTGGAACTCCAGgTATGGTGGGTTATGGCATGGCTAAAGCTGCAGTGCATCAGCTGTGTCAGAGTCTGTCTGGAGAGAACAGTGGTCTCCCGGCTGGATCCGTGGCTGTAGCCATTCTACCGGTTACCTTGGATACGCCGATGAACAGGAAATTCATGCCAGACGCAGACTTCAGCTCCTGGACCCCTCTGGAGTACATTGCCCAAACCTTCTACAGCTGGGCCACTGGTTCAGGGCGGCCAGCTTCAGGCAGTCTGATCCAGCTGGTGACGGCAGGAGGAGTAACGGAGGCCACACCGGTTCACTAAAAAGCACCGGAGCgatagaagaagaaagagaagaagaaaagagggttCTGGATGAGGCAAACATTTTCTCGTTTTATTCTGCTGCTGAAACAAAAGATCAGAACCTTCATGAAGAAAGAAGAACCAGAGATCTCATCCATTCAGCCTTATGTATTGTGTTAGAAAACAGCGCCCCTTATTGGCAGGCCTGTTCATCTGTGTGTCTCACTCTCAAATCATCTAGACACTTCTTAAACCAAGACTGAAAAAGCCTGTTGCTGCTGATCTGTAATGACGATTGTAACTGATCTATCTGTGCTCCACCCCAACTGTGTTCTTTTATAACaagcttctttttttacagGTGGAGATGTACAGGAAAACAACAGTATCacattaaagacaaaaaaactaatatttatacaattttatacaCAAGCTGTGGGAGGAGGGGGAAACATGTTACACCACATCGCAGACATGGCAGCCATCCGGAACACCCCCACCTTGGATTTGAATTCAGTTCGTCAAATGGGAAAATAGGTGTGTGACCCATCAATCTGGTATAGAATTTTACCAGAAAAACAGTGATGTGCTTCATATCAACATAACTTTATTTGTTCAAACAGTGGATTTAGTTTGTTAAACTCACTGTTAAGAAAGAAATTTGTCTAATCACTAAAAACCTTTTGTTTGCCCTCTCCTGCAAATTCCTTTCATCTGTCTGGAATCTGGAATCATTCTTTGTCAGGTGTTGCAGTAGAAACGAGGATGATCTCAACATCTTCAGTTCTGCctcaaaaacacttttcttcATATGgcttgttaaaataaaacactgttttaacatGAGAACAAATGAGGTCACATTATCATGAAGCATACAGTTGTTTTTCTGATAAAATTCTCTACCTGTTTGATATATCACACACCTACCTTCCCATTAATAAAGACATGAAGttgaatccaagatggctgccatGATGGTGTTGGTCTTAACATGGTCTTAACAGGTTTCCCTTATCAGCCACAGCTTGTTTATAAACTCTGCCAAACTGCTTCTGTTTTTTATGGGTGTTTTCTTACTTTTGAGAAACCCTGTACACCAATCATGTATAACATTAAGCTGATGTTTTAGAGTATACACAATCAGAGACACTTTGACAAGGGCCAGATTTTATGATGGCTAGACGACTGgatcagaacatctccaaaacctgAGGTCTTGTGGAGTACATGCCTTAGCCATGATTATATAggtaaaaaaacattctgattGGATGGTGTTCCATTAGACGTTTTGAGTTGTTGACCCATTTATTTCCAACTAAAATGTAACTGGAAAACACTTTCTTCAGAACAGAACAGGACTAGCATGAATAGCATGGATAGATCAGTTTTCAATAGGTACTTGCGGTTCTTAAGCTCTTTTTAAATCTAGGCTCACAAAATCACGTCCACCACTCTTGACACCATCATTCCAAAATCAAAAGTGTAGCTTTACATCTGTCTTTACAACAGTGTTTACAGATGTTGTTGTTATTCAATATGTTTCAAGACATCTTTCCAAAGGAGTGGCcttagtctgtgtgtgtgtgtgtgtgtgtgtgtgaatgtgtttcaGTGCGAGAGAATCataaatgaaacattttacTGTGACATCCATCAGAATCTGTCCTGTACCACCTGGCTGAATGTTCCTGTGCCATTAAACTTGAATGAACCACTCTAAACCAGTAAACATTTACTGCCATCCACTGCTTA

Function

NR:

description
PREDICTED: dihydropteridine reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00357 QDPR; dihydropteridine reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683988.1 True 2506 mRNA 0.43 7 30363293 30390245

Neighbor

gene id symbol gene type direction distance location
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding downstream 167915 30168101 ~ 30195378 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding downstream 253253 30061148 ~ 30110040 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding downstream 891413 29434479 ~ 29471880 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 1205725 29043975 ~ 29157568 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding downstream 1342366 29019220 ~ 29020927 (-)
LOC103031457 NA coding upstream 864102 31254347 ~ 31260863 (-)
LOC103031775 NA coding upstream 874326 31264571 ~ 31266955 (-)
LOC103032100 NA coding upstream 886932 31277177 ~ 31282581 (-)
rapgef2 rapgef2 coding upstream 899889 31290134 ~ 31382522 (-)
LOC103044229 LOC103044229,LOC108430909 coding upstream 1686346 32076591 ~ 32116564 (-)
LOC111195840 NA non-coding downstream 35563 30323562 ~ 30327730 (-)
G209124 NA non-coding downstream 202963 30159877 ~ 30160330 (-)
G209121 NA non-coding downstream 206780 30155074 ~ 30156513 (-)
G209104 NA non-coding downstream 234632 30128178 ~ 30128661 (-)
G209089 NA non-coding downstream 340572 30022099 ~ 30022721 (-)
G209166 NA non-coding upstream 47073 30437318 ~ 30437788 (-)
G209177 NA non-coding upstream 352181 30742426 ~ 30742669 (-)
G209184 NA non-coding upstream 366061 30756306 ~ 30757507 (-)
G209189 NA non-coding upstream 421471 30811716 ~ 30837740 (-)
G209208 NA non-coding upstream 629855 31020100 ~ 31020380 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 45077 30201531 ~ 30318216 (-)
G209127 NA other downstream 200320 30162457 ~ 30162973 (-)
G209090 NA other downstream 338743 30023961 ~ 30024550 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 1502519 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 1667593 28662183 ~ 28695700 (-)
fstl5 fstl5,LOC107550871 other upstream 123662 30513907 ~ 30803356 (-)
G209224 NA other upstream 708599 31098844 ~ 31099861 (-)
G209256 NA other upstream 883623 31273868 ~ 31274402 (-)
G209303 NA other upstream 1127188 31517433 ~ 31517892 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 2239049 32629294 ~ 32639929 (-)

Expression


Co-expression Network