LOC103031457


Basic Information

Item Value
gene id LOC103031457
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 31254347 ~ 31260863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683991.1
GACCAATCGCACAACTGAGAATTGCTTAATCTTACCAAATAAAAGTCGTTCAGCCCGTTCACTGTACACAGCTGTTTACAGACTCTACCTGgtttttctccAAAACCATGGCGATCTTGACTGTTGCATTGCTTCTTGGGCTTTTGTTGGCCACAGATGGAGTATGTAAAACTGCAGAGTGGTCTGCATACGGAATCAGAAAATTCAAGTTCTTCGAAACAAAATTGGCATGGGCTGATGCAGAGGCTGAGTGTTTAAAACATGGTGGGAATCTTGCTTCAATTCACGGCTCTGTAGAAAATGACTTCATACTGAATCTCATTAAAAAAGGCGCTGGCTCTATCGTGCGTACCTGGATAGGCGGCCATGATACTGTAAAAGAAGGAAGATGGTTCTGGAGTGATGGATCCAAAATGAACTTCCAGAACTGGGGAAAAAATGAACCCAATAACAACCTGTTGGGAGAAGACTGCCTTGAAATTGTTTATGGAGGTACGCATTTATTACAGCTTCAGATAGCTGCATTCTCTTTCCATCAGCCTGTTTCTACAGTGAAATGTGTTTAATCTACAGCAAGATCCAAAAGGCTGAAACCTTAGTCAGAA

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683991.1 True 605 mRNA 0.42 6 31254347 31260863

Neighbor

gene id symbol gene type direction distance location
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding downstream 864102 30363293 ~ 30390245 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding downstream 1058969 30168101 ~ 30195378 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding downstream 1144307 30061148 ~ 30110040 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding downstream 1782467 29434479 ~ 29471880 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 2096779 29043975 ~ 29157568 (-)
LOC103031775 NA coding upstream 3708 31264571 ~ 31266955 (-)
LOC103032100 NA coding upstream 16314 31277177 ~ 31282581 (-)
rapgef2 rapgef2 coding upstream 29271 31290134 ~ 31382522 (-)
LOC103044229 LOC103044229,LOC108430909 coding upstream 815728 32076591 ~ 32116564 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding upstream 1331834 32592697 ~ 32601011 (-)
G209236 NA non-coding downstream 37199 31216615 ~ 31217148 (-)
G209208 NA non-coding downstream 233967 31020100 ~ 31020380 (-)
G209189 NA non-coding downstream 416607 30811716 ~ 30837740 (-)
G209184 NA non-coding downstream 496840 30756306 ~ 30757507 (-)
G209177 NA non-coding downstream 511678 30742426 ~ 30742669 (-)
G209254 NA non-coding upstream 10973 31271836 ~ 31272348 (-)
G209261 NA non-coding upstream 24289 31285152 ~ 31285360 (-)
G209301 NA non-coding upstream 255096 31515959 ~ 31516197 (-)
G209304 NA non-coding upstream 258169 31519032 ~ 31519276 (-)
G209329 NA non-coding upstream 484722 31745585 ~ 31745994 (-)
G209224 NA other downstream 154486 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 450991 30513907 ~ 30803356 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 936131 30201531 ~ 30318216 (-)
G209127 NA other downstream 1091374 30162457 ~ 30162973 (-)
G209090 NA other downstream 1229797 30023961 ~ 30024550 (-)
G209256 NA other upstream 13005 31273868 ~ 31274402 (-)
G209303 NA other upstream 256570 31517433 ~ 31517892 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 1368431 32629294 ~ 32639929 (-)
G209458 NA other upstream 1694752 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 2341236 33602099 ~ 33604989 (-)

Expression


Co-expression Network