LOC111195776


Basic Information

Item Value
gene id LOC111195776
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32614920 ~ 32626576 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684003.1
TTTTATTATAGTAAATGAAAGGTGATTTCAGTGTTAAAGTTGAATGTAAACAGGGTAACAGTGGTTACCATGGCAGCGCTATAAACACAGCTGAGTTTCTGAGTGTGTTCAGACCAGCGCTTTATTGAACTGGTGATCACACTGtgctctactgctctctctAGAACCTGCTCTACACCTTCACCAACTTCACCAGTGATTCTACTGAGAGTCACTGGTGCTCCACACAACACTGTGCCAATTTAGCTCAGCTTCATATTCAAATCCACCCCATCTGCAATTTATTAGAGATTATTCACTTTCCACATAATCCACTTTCCACATAATTCACTTCCATATTCACACACTACATTCACATCCACTTTTACACCCACACACTCCATTCACATCCatttctgcacacacacacactccattcacacatacacacacgtctCCAATCTTTACCAACAGGAATATCTCAACGTCTGCATCATGGCCAGCTCATCTCGACCCATCCAGGACATCGTTCATCCGGAAGATAGGTAACGAGACAACGAGAAGAGCATGAAGAGGTCCGCCCTCCAGCTGTCCCCAGCACCTCTTGCTGTGAAGAAGCAAAAGATCCAGGTGTCTTCACCTGCGTCTGCTCTCACGCACGAGATGGTGCTGGACAACGTCTGCACTGCTGAGCTGCTGTACCTGCTAGGAGAGTTCCTGTGCCGCCGCTGCAGGAACGTAGGACGTCTCACTCCTTGGGTCTCAACGTCTTGGCTCCGCACTGTGGACATGCTCCTGGTCGTGTCCAGAAGACAGAGGAAGCCCTTTCTCTGCCCGGGCAGCGTGGTCTTCCTCTACATGCTGTGCCGTGACTGTGTCTCAGCGGAGGTGTCCAGCAAGAAGGAGTTGTGTGCAGAGCTGCTCATCTGCTTCTACATCTCGTGCTCTTACATCGGCACTAAACTCGGCTACCGGGCTAGGTCTTTCATGCTGGGGAGCGACGGGCAGGAATTCTGGAAGCGCACACTGGACATCACCAAGCGCATGAGCCACAAGATGCTGCAGATCAACATCTCTCCCCAGTTCTTTGCCCAAGTCCTTGCTGACCTGAAGAACAGGACGGACAGTTAGAAGATCCTGAGGAAGTGAGGAATAACAGGATTAAAAgaggatttaaaaaatataagggGTGCACGATATGGACAAAGATTACGATACGCGATAATGGAGTTGGATATCCTCAAATGTTTTTCGGCACTTTGCATGGctgcacttatttttttccaggatAAGAAGTCGTTTGGTGTCTGTGTTCACTGAtgtcctcactctacctccagcctagTTGTATAACGTGAGCACAGTCTGCAAGCTGTGGTAATGCACTTTCAAATTTTCTTGGAaacttaatatataattattat
>XM_022684004.1
TCAAAATGActcttttgatttgatttgatttgatatattTTAGCTTGTGTTCTAAAACCAAATCCACAGCTACCTTTACCATCTCAAACTTTCCTCATAAACTAAAACCACTACTTATATTACTGGAATCTTAGCAGATGTTTGTAGCAAAGTGGTTGAAAATTGTAACACATTTTTACGTTGggaacagaatacagaatgctTAGGTCAGGAGTAATGGGGGCTGGAATAGAATTAAAATGTGctgctgaataacattttaacatttttaaaatgtgttaatactGAATTACTAATCTGACAGGATACTGTACTTTTTTCTCTACAGGTGCCAATTTAGCTCAGCTTCATATTCAAATCCACCCCATCTGCAATTTATTAGAGATTATTCACTTTCCACATAATCCACTTTCCACATAATTCACTTCCATATTCACACACTACATTCACATCCACTTTTACACCCACACACTCCATTCACATCCatttctgcacacacacacactccattcacacatacacacacgtctCCAATCTTTACCAACAGGAATATCTCAACGTCTGCATCATGGCCAGCTCATCTCGACCCATCCAGGACATCGTTCATCCGGAAGATAGGTAACGAGACAACGAGAAGAGCATGAAGAGGTCCGCCCTCCAGCTGTCCCCAGCACCTCTTGCTGTGAAGAAGCAAAAGATCCAGGTGTCTTCACCTGCGTCTGCTCTCACGCACGAGATGGTGCTGGACAACGTCTGCACTGCTGAGCTGCTGTACCTGCTAGGAGAGTTCCTGTGCCGCCGCTGCAGGAACGTAGGACGTCTCACTCCTTGGGTCTCAACGTCTTGGCTCCGCACTGTGGACATGCTCCTGGTCGTGTCCAGAAGACAGAGGAAGCCCTTTCTCTGCCCGGGCAGCGTGGTCTTCCTCTACATGCTGTGCCGTGACTGTGTCTCAGCGGAGGTGTCCAGCAAGAAGGAGTTGTGTGCAGAGCTGCTCATCTGCTTCTACATCTCGTGCTCTTACATCGGCACTAAACTCGGCTACCGGGCTAGGTCTTTCATGCTGGGGAGCGACGGGCAGGAATTCTGGAAGCGCACACTGGACATCACCAAGCGCATGAGCCACAAGATGCTGCAGATCAACATCTCTCCCCAGTTCTTTGCCCAAGTCCTTGCTGACCTGAAGAACAGGACGGACAGTTAGAAGATCCTGAGGAAGTGAGGAATAACAGGATTAAAAgaggatttaaaaaatataagggGTGCACGATATGGACAAAGATTACGATACGCGATAATGGAGTTGGATATCCTCAAATGTTTTTCGGCACTTTGCATGGctgcacttatttttttccaggatAAGAAGTCGTTTGGTGTCTGTGTTCACTGAtgtcctcactctacctccagcctagTTGTATAACGTGAGCACAGTCTGCAAGCTGTGGTAATGCACTTTCAAATTTTCTTGGAaacttaatatataattattat

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0042325 regulation of phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684003.1 False 1403 mRNA 0.47 3 32614920 32626576
XM_022684004.1 True 1497 mRNA 0.45 2 32614920 32626099

Neighbor

gene id symbol gene type direction distance location
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding downstream 5012 32602209 ~ 32609908 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 13909 32592697 ~ 32601011 (-)
LOC103044229 LOC103044229,LOC108430909 coding downstream 498356 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 1232398 31290134 ~ 31382522 (-)
LOC103032100 NA coding downstream 1332339 31277177 ~ 31282581 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 1173526 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 1214411 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 1226493 33853069 ~ 33854406 (-)
pdgfc pdgfc coding upstream 1282533 33909109 ~ 34001611 (-)
fam198b fam198b coding upstream 1584989 34211565 ~ 34220540 (-)
G209329 NA non-coding downstream 868926 31745585 ~ 31745994 (-)
G209304 NA non-coding downstream 1095644 31519032 ~ 31519276 (-)
G209301 NA non-coding downstream 1098723 31515959 ~ 31516197 (-)
G209261 NA non-coding downstream 1329560 31285152 ~ 31285360 (-)
G209254 NA non-coding downstream 1342572 31271836 ~ 31272348 (-)
LOC111195779 NA non-coding upstream 73485 32700061 ~ 32701470 (-)
LOC111195778 NA non-coding upstream 76872 32703448 ~ 32704069 (-)
G209406 NA non-coding upstream 178723 32805299 ~ 32807680 (-)
G209433 NA non-coding upstream 202286 32828862 ~ 32829063 (-)
G209440 NA non-coding upstream 259114 32885690 ~ 32886052 (-)
G209303 NA other downstream 1097028 31517433 ~ 31517892 (-)
G209256 NA other downstream 1340518 31273868 ~ 31274402 (-)
G209224 NA other downstream 1515059 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 1811564 30513907 ~ 30803356 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 2296704 30201531 ~ 30318216 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 2718 32629294 ~ 32639929 (-)
G209458 NA other upstream 329039 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 975523 33602099 ~ 33604989 (-)
G209640 NA other upstream 1544191 34170767 ~ 34212849 (-)
G209660 NA other upstream 1608342 34234918 ~ 34274593 (-)

Expression


Co-expression Network