spata4 (spata4)


Basic Information

Item Value
gene id spata4
gene name spata4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34727162 ~ 34731836 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684015.1
tgtgtttttctctgatttagaGATTTCTCCAATGGGTTCCTTGTGGCTGAGATCTTTTCCAGGTTCTACCCAGAGGATTTCCCCATGCACTCTTATGGGAATGGGACATCACTGCCCACCAAGCAGAGCAACTGGTCTCAGATAGAGAAGggaTTAATGAAACTGCAGCTCAGTCTTGTGAAGGAAGCTGTGGACGGTACCATCCACTGCAAACCTGGAGCAGCAGAAGCTTTAGTGCAGGAGATTTACACTCTAATGACCAACCGGAGGATCAGCTCTGTCCAGGAGGGGGCGCTCGACTTCACAGATCTGAGCTACCAGGAGCAGCTGCCAATCGTGGCTCGAGCGACCGCCTCCAAAGCCATAAAGAACAACCTGCGGCTCAGCGAGGAGATAGCTGATCCCAACATCACAGCCACCCAGCAGAAGATCCAGAACATCATCCACCGACACGTCGAGCGCAGGAAAGACGAGCGGATCCGCCATCCCAAGCGTTTCGGAGTGAAGCCCACGCTGGGCGAGCAGGCTGTTAGACTGCCCCCCACCAGCGTCCAGAACCACACAGACCTCCACACCCAGACCAGCCACACCGGCAATCCAGTAGCACTTGGAACCGAATCCACTCTGGTCCAATCTGGAGATATTAGACACTGGGAGCTGGACACGCCATCACTGCTGTCCTAAGGAAGCATTAGTATTTTCTTACTCAGACTGGTTTTAAAGCAGGCCTTCATAATAAacacaacttattttttttccatccatTTTCATACTTTTCACAAATCAATAAATAAGCCTTTAGCAGATTACACAAA

Function

symbol description
spata4 Predicted to enable microtubule binding activity. Predicted to be involved in regulation of cytoskeleton organization. Predicted to be active in axoneme. Is expressed in nervous system; otic vesicle; and pleuroperitoneal region. Orthologous to human SPATA4 (spermatogenesis associated 4).

NR:

description
spermatogenesis-associated protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684015.1 True 815 mRNA 0.50 5 34727162 34731836

Neighbor

gene id symbol gene type direction distance location
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 19106 34676126 ~ 34708056 (-)
LOC103036564 LOC103036564,LOC108425002 coding downstream 52955 34659490 ~ 34674207 (-)
tmem144 NA coding downstream 497281 34221879 ~ 34229881 (-)
fam198b fam198b coding downstream 506622 34211565 ~ 34220540 (-)
pdgfc pdgfc coding downstream 725551 33909109 ~ 34001611 (-)
aga aga coding upstream 42226 34774062 ~ 34785667 (-)
ctso NA coding upstream 415795 35147631 ~ 35167225 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding upstream 436704 35168540 ~ 35263408 (-)
LOC111195785 NA coding upstream 1957763 36689599 ~ 36691324 (-)
LOC107197706 NA coding upstream 2058193 36790029 ~ 36792803 (-)
G209814 NA non-coding downstream 93946 34632785 ~ 34633216 (-)
G209793 NA non-coding downstream 113766 34610036 ~ 34613396 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding downstream 160644 34563439 ~ 34566518 (-)
G209682 NA non-coding downstream 340527 34386145 ~ 34386635 (-)
LOC111195783 NA non-coding downstream 538533 34170756 ~ 34188629 (-)
LOC111195784 NA non-coding upstream 393327 35125163 ~ 35145580 (-)
G209872 NA non-coding upstream 407614 35139450 ~ 35140107 (-)
G209894 NA non-coding upstream 576483 35308319 ~ 35308594 (-)
G209924 NA non-coding upstream 915566 35647402 ~ 35648209 (-)
G209929 NA non-coding upstream 970953 35702789 ~ 35703454 (-)
egf NA other downstream 70678 34620461 ~ 34656484 (-)
G209660 NA other downstream 452569 34234918 ~ 34274593 (-)
G209640 NA other downstream 514313 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 1122173 33602099 ~ 33604989 (-)
G209458 NA other downstream 1771077 32955615 ~ 32956085 (-)
G210059 NA other upstream 1978584 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 2077471 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 2433198 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 4795797 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 4881879 39613715 ~ 39632176 (-)

Expression


Co-expression Network