ctso


Basic Information

Item Value
gene id ctso
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35147631 ~ 35167225 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684022.1
aaaatctgtaaaataatacatttttaaaaatgtaacctTCTCAACCCTTTCTATAGAGTTAACAGCTGGCAGTTGCCTGTATGGTAATACAGTACTGCGGCCAGCAGGAGGCGATAGAGCTCTGTATCTGTATGATCTCACTCTCAGCTGAGGGGCGGAGCTTAATCTGctctgaaagtgaaagtggaGGGCTGGAGGAGCTTCAGCGGGGTGAGCTGGTGTTTATCCGGGTGAATGGCTCGTGCAGCAGCGGTTACTGGTTTATTATGGTGCCAGTTTGTGCTGGTCCAGTTCTCCAGTGGAGACGTGCTGCACGTGCCTGAGGAGCTCGCTCAGGAAGCGACCTTCATCAGGACCTCAAACACAGGGGAAGATAACACGACATGGAGCCATATACAGGCTTCAGTCAAGAGGCAGGCCTTCCTGAACTCACACTCCCAGAACTACAAGCAGCCCACCAAATACGGACCCAACCAGTTCTCCCACCTCTCACCACATCAGTTCAAAGatctATATCTCCGGGCCCGGCCTGAGGTCGTTCCCAAGTACAATTCGACCCGATTCGGTCACCTCAGGTCAAAACCTTGTCCTGCACGGTTTGATTGGAGAGAGTATAAAGCCATTGGACCGGTTCAGGACCAGGGCTTGtGTGGGGGGTGCTGGGCGTTCAGCGTGGTGGCTGCTATCGAGGCGGTTGAAGTAAAGGATGGAGGAACTCTGCAGGACCTGAGCGTTCAGCAGGTCATCGACTGCTCTTATATAAACGCCGGCTGTAAGGGAGGATCCACTGTGTCCACGCTGAAGTGGCTCAAACAGTCTAAGATGAAGCTGGTGAGAGAGAAGCGGTACCCATATAAGGCTGAGACGAAGATGTGCCAGATCTTCCCTCAGTCCTTCGGCAGCGCCTCGGTGAAGGACTACTATGCATTCGACTTCAGtagTCAGGAGGAGCTGATGATGCAGTGGTTGGTGTACGCAGGGCCGCTGGTGGTGATTGTGGATGCCGTCAGTTGGCAGGATTATCTCGGAGGAGTCATTCAACACCACTGCTCCAGTCGCCATGCCAACCACGCTGTCGTCATCATCGGCTATGATATTACagGCGAGGTGCCGTTCTGGATCATTCGGAACTCCTGGGGGAAGTCCTGGGGTGACGGGGGATACGCGTACGTTAAAATGGGAGAGAATATGTGTGGTGTGGCTGTGGTGTTGTTGCTGTGTTGGCATTGCAGTGTTGCTGTGGTGGCGTTGATGTTGTAGCGTTGCTGTGTTGGA
>XM_022684023.1
GTTAATcagtaaaatctgtaaaataatacatttttaaaaatgtaacctTCTCAACCCTTTCTATAGAGTTAACAGCTGGCAGTTGCCTGTATGGTAATACAGTACTGCGGCCAGCAGGAGGCGATAGAGCTCTGTATCTGTATGATCTCACTCTCAGCTGAGGGGCGGAGCTTAATCTGctctgaaagtgaaagtggaGGGCTGGAGGAGCTTCAGCGGGGTGAGCTGGTGTTTATCCGGGTGAATGGCTCGTGCAGCAGCGGTTACTGGTTTATTATGGTGCCAGTTTGTGCTGGTCCAGTTCTCCAGTGGAGACGTGCTGCACGTGCCTGAGGAGCTCGCTCAGGAAGCGACCTTCATCAGGACCTCAAACACAGGGGAAGATAACACGACATGGAGCCATATACAGGCTTCAGTCAAGAGGCAGGCCTTCCTGAACTCACACTCCCAGAACTACAAGCAGCCCACCAAATACGGACCCAACCAGTTCTCCCACCTCTCACCACATCAGTTCAAAGatctATATCTCCGGGCCCGGCCTGAGGTCGTTCCCAAGTACAATTCGACCCGATTCGGTCACCTCAGGTCAAAACCTTGTCCTGCACGGTTTGATTGGAGAGAGTATAAAGCCATTGGACCGGTTCAGGACCAGGGCTTGtGTGGGGGGTGCTGGGCGTTCAGCGTGGTGGCTGCTATCGAGGCGGTTGAAGTAAAGGATGGAGGAACTCTGCAGGACCTGAGCGTTCAGCAGGTCATCGACTGCTCTTATATAAACGCCGGCTGTAAGGGAGGATCCACTGTGTCCACGCTGAAGTGGCTCAAACAGTCTAAGATGAAGCTGGTGAGAGAGAAGCGGTACCCATATAAGGCTGAGACGAAGATGTGCCAGATCTTCCCTCAGTCCTTCGGCAGCGCCTCGGTGAAGGACTACTATGCATTCGACTTCAGTCAGGAGGAGCTGATGATGCAGTGGTTGGTGTACGCAGGGCCGCTGGTGGTGATTGTGGATGCCGTCAGTTGGCAGGATTATCTCGGAGGAGTCATTCAACACCACTGCTCCAGTCGCCATGCCAACCACGCTGTCGTCATCATCGGCTATGATATTACagGCGAGGTGCCGTTCTGGATCATTCGGAACTCCTGGGGGAAGTCCTGGGGTGACGGGGGATACGCGTACGTTAAAATGGGAGAGAATATGTGTGGTGTGGCTGTGGTGTTGTTGCTGTGTTGGCATTGCAGTGTTGCTGTGGTGGCGTTGATGTTGTAGCGTTGCTGTGTTGGA
>XM_022684024.1
tgtaaaataatacatttttaaaaatgtaacctTCTCAACCCTTTCTATAGAGTTAACAGCTGGCAGTTGCCTGTATGGTAATACAGTACTGCGGCCAGCAGGAGGCGATAGAGCTCTGTATCTGTATGATCTCACTCTCAGCTGAGGGGCGGAGCTTAATCTGctctgaaagtgaaagtggaGGGCTGGAGGAGCTTCAGCGGGGTGAGCTGGTGTTTATCCGGGTGAATGGCTCGTGCAGCAGCGGTTACTGGTTTATTATGGTGCCAGTTTGTGCTGGTCCAGTTCTCCAGTGGAGACGTGCTGCACGTGCCTGAGGAGCTCGCTCAGGAAGCGACCTTCATCAGGACCTCAAACACAGGGGAAGATAACACGACATGGAGCCATATACAGGCTTCAGTCAAGAGGCAGGCCTTCCTGAACTCACACTCCCAGAACTACAAGCAGCCCACCAAATACGGACCCAACCAGTTCTCCCACCTCTCACCACATCAGTTCAAAGatctATATCTCCGGGCCCGGCCTGAGGTCGTTCCCAAGTACAATTCGACCCGATTCGGTCACCTCAGGTCAAAACCTTGTCCTGCACGGTTTGATTGGAGAGAGTATAAAGCCATTGGACCGGTTCAGGACCAGGGCTTGtGTGGGGGGTGCTGGGCGTTCAGCGTGGTGGCTGCTATCGAGGCGGTTGAAGTAAAGGATGGAGGAACTCTGCAGGACCTGAGCGTTCAGCAGGTCATCGACTGCTCTTATATAAACGCCGGCTGTAAGGGAGGATCCACTGTGTCCACGCTGAAGTGGCTCAAACAGTCTAAGATGAAGCTGGTGAGAGAGAAGCGGTACCCATATAAGGCTGAGACGAAGATGTGCCAGATCTTCCCTCAGTCCTTCGGCAGCGCCTCGGTGAAGGACTACTATGCATTCGACTTCAGtagTCAGGAGGAGCTGATGATGCAGTGGTTGGTGTACGCAGGGCCGCTGGTGGTGATTGTGGATGCCGTCAGTTGGCAGGATTATCTCGGAGGAGTCATTCAACACCACTGCTCCAGTCGCCATGCCAACCACGCTGTCGTCATCATCGGCTATGATATTACagGCGAGGTGCCGTTCTGGATCATTCGGAACTCCTGGGGGAAGTCCTGGGGTGACGGGGGATACGCGTACGTTAAAATGGGAGAGAATATGTGTGGTAAGCTCAAACAGAATTAACAGAAGGTCAGACTGCATCATTACTACAGCTCAGTTTACTCCCTGCACACTATAGAACTGTATTCCAGTACTTCTCAGCTACTGCTGTCACATTCCTCTCACTGTGTTAGTATAGATACTTTCAGTGTGatgtattaaaatatgataTTCAAGTATTTAAGCGTAAGTTCCATTAATAATGCAAACATCATTGTTTGAATAAATATAAACGTAtgaatgttatttatattacatattaataattCCAAAATATGCTTTTCTTAAAGTGATGTTTTATCACTCTTAACTATAAAATTCTGATGTTTTATTGAtgctttgtaaataaaaatgcgtttgttaaaaaaattatgtttaattttttgtatttcctttcatttcattcagtatattttacatttacttgaTGCAGCATAAAATTGGCAGTTTGTCAA

Function

NR:

description
cathepsin O isoform X2

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01374 CTSO; cathepsin O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684022.1 False 1275 mRNA 0.53 8 35147631 35167215
XM_022684023.1 False 1282 mRNA 0.52 8 35147631 35167225
XM_022684024.1 True 1640 mRNA 0.46 7 35152905 35167209

Neighbor

gene id symbol gene type direction distance location
aga aga coding downstream 361964 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 415795 34727162 ~ 34731836 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 439575 34676126 ~ 34708056 (-)
LOC103036564 LOC103036564,LOC108425002 coding downstream 473424 34659490 ~ 34674207 (-)
tmem144 NA coding downstream 917750 34221879 ~ 34229881 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding upstream 1315 35168540 ~ 35263408 (-)
LOC111195785 NA coding upstream 1522374 36689599 ~ 36691324 (-)
LOC107197706 NA coding upstream 1622804 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 1626157 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 1655058 36822283 ~ 36827999 (-)
LOC111195784 NA non-coding downstream 2051 35125163 ~ 35145580 (-)
G209872 NA non-coding downstream 7524 35139450 ~ 35140107 (-)
G209814 NA non-coding downstream 514415 34632785 ~ 34633216 (-)
G209793 NA non-coding downstream 534235 34610036 ~ 34613396 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding downstream 581113 34563439 ~ 34566518 (-)
G209894 NA non-coding upstream 141094 35308319 ~ 35308594 (-)
G209924 NA non-coding upstream 480177 35647402 ~ 35648209 (-)
G209929 NA non-coding upstream 535564 35702789 ~ 35703454 (-)
G209946 NA non-coding upstream 668978 35836203 ~ 35836645 (-)
G209951 NA non-coding upstream 706650 35873875 ~ 35878253 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 388540 34709771 ~ 34759091 (-)
egf NA other downstream 491147 34620461 ~ 34656484 (-)
G209660 NA other downstream 873038 34234918 ~ 34274593 (-)
G209640 NA other downstream 934782 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 1542642 33602099 ~ 33604989 (-)
G210059 NA other upstream 1543195 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 1642082 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 1997809 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 4360408 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 4446490 39613715 ~ 39632176 (-)

Expression


Co-expression Network