Gene
RNA
| Item | Value |
|---|---|
| gene id | G50917 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 757122 ~ 760273 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU57944 | False | 1076 | lncRNA | 0.37 | 7 | 757122 | 760273 |
| TU57945 | True | 533 | lncRNA | 0.41 | 2 | 757122 | 757733 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_00719164_00724772 | SRPX | coding | upstream | 32071 | 719164 ~ 725051 (+) |
| CI01000009_00704243_00710805 | NA | coding | upstream | 46317 | 704065 ~ 710805 (+) |
| CI01000009_00620687_00621072 | NA | coding | upstream | 135585 | 620687 ~ 621537 (+) |
| CI01000009_00611583_00617762 | TFG | coding | upstream | 139360 | 611305 ~ 617762 (+) |
| CI01000009_00608513_00609159 | JAGN1, JAGN1A, JGN1A | coding | upstream | 147747 | 608513 ~ 609375 (+) |
| CI01000009_00805606_00808374 | NA | coding | downstream | 44631 | 804904 ~ 808404 (+) |
| CI01000009_00852319_00853083 | CX45.6 | coding | downstream | 90969 | 851242 ~ 853461 (+) |
| CI01000009_00913995_00916434 | COMMD6 | coding | downstream | 153722 | 913995 ~ 916565 (+) |
| CI01000009_00920570_00955979 | TBC1D4 | coding | downstream | 160155 | 920428 ~ 956574 (+) |
| CI01000009_01034561_01035452 | KLF12 | coding | downstream | 274288 | 1034561 ~ 1035728 (+) |
| G50913 | NA | non-coding | upstream | 951 | 746194 ~ 756171 (+) |
| G50911 | NA | non-coding | upstream | 11944 | 742001 ~ 745178 (+) |
| G50909 | NA | non-coding | upstream | 21097 | 735727 ~ 736025 (+) |
| G50879 | NA | non-coding | upstream | 27302 | 728863 ~ 729820 (+) |
| G50876 | NA | non-coding | upstream | 28640 | 727073 ~ 728482 (+) |
| G50921 | NA | non-coding | downstream | 16011 | 776284 ~ 776509 (+) |
| G50973 | NA | non-coding | downstream | 26611 | 786884 ~ 787490 (+) |
| G50978 | NA | non-coding | downstream | 39354 | 799627 ~ 799859 (+) |
| G50984 | NA | non-coding | downstream | 77667 | 837940 ~ 840919 (+) |
| G50947 | NA | non-coding | downstream | 113829 | 874102 ~ 877421 (+) |
| CI01000009_00094836_00095813 | NA | other | upstream | 661335 | 94371 ~ 97230 (+) |
| G50920 | NA | other | downstream | 9568 | 769841 ~ 770233 (+) |
| CI01000009_01431700_01434463 | NA | other | downstream | 662574 | 1429873 ~ 1435328 (+) |
| G51122 | NA | other | downstream | 919873 | 1680146 ~ 1681966 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | downstream | 1133962 | 1897343 ~ 1919516 (+) |
| G51274 | NA | other | downstream | 1494826 | 2255099 ~ 2350486 (+) |
