LOC111195785


Basic Information

Item Value
gene id LOC111195785
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36689599 ~ 36691324 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684034.1
tatatatatatagtatacataGTATACTAGTATAAAAGGCTTACATGGGAATTGATTGGGTTTGtctatattatattgtttagACACAGTATTACTGAGTACGTAGGCTGCACTGCTGTAGAATGTTAGTGTGAGTGTTCTAAAGGTGATGATGTCATCAGCTTTTTTTGATTGGCTGAGTGTTTTAAAGGTGATGATGTCAGGAACCAGCATTCCGACGGGTATAAATAGCTGCTTGCTGGAGTTTTTGGTCTGTTGGATGTTCGGTGTTGGAGAGAGCAGTTCGTAAGAATAGTGCTACCCATAGCTACAGACAACTAGACATGGTGCAGATGCTGAAAGCGTTAATCGTTCCAGGTGTGCTTGCCGTCGCcggctgctgctggtggtggtatAGCTCACGGAAGAAAACTGGAGGTACTGGCCAGGACAGTGAGGCGAAGGAGGATGTGCTTTCTTCCTGTAGTGGAGAAGAGCAATGTGCTCGGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTCCCCCTTCAGGACCGTGTGGATGACAGCAAGCCAGCTGAAAGCAGTGAGGGGAAGAGTCAGCTTGACGAGCCATCCACCATCATAGAGGATGCTCAGGCTGAAGACACTTTAGTGTCTGCTACAGAGCTTCCAGAGCTCATTGTAGTCGATGACCTATCTTCCTCTTCTGAAGATGGACAGTGTTCTCAGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTTCCCCTTCAGGACAGTGTGGAAGACAGCCAGCCAGGTGAAAGCAGTGAGGGGAAAAGTCAGCTTGACGAGCCATCCACCATCATAGAGGATCCTCAGGCTGAAGACACTTTAGTGTCTGCTATAGAGCTTCCAGAGCTCATTGTAGTCGATGACCTATCTTCCTCTTCTGAAGATGGACAGTGTTCTCAGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTTCCCCTTCAGGACAGTGTGGAAGACAGCCAGCCAGGTGAAAGCAGTGAGGGGAAAAGTCAGCTTGACGAGCCATCCACCATCATGGAGGATGCTCAGGCTGAAGACACTTTAGTGTCTGCTATAGAGCTTCCAGAGCTCATTGTAGTCGATGACCTATCTTCCTCTTCTGAAGATGGACAGTGTTCTCAGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTTCCCCTTCAGGACAGTGTGGAAGATAGCCAGTCAGATGGACAGTGTGCTCAGTCAAGTCCAGAGGATCTCCCCCTTCAGGACAGTGTGGAGGACAGCCAGCCAGAAGTGAGCGGTGACGGAAAAAGTCAGCTTGAGGAGCTTGAGGTGCCAACCACCATCAAAGAGGATCCTCCTACTAAAGACATACCATCATCCTTTCTGGGACGAAGGGCAAAACCCCTGGTCCGTTCCACCATCCTGCCTAAGAAGCCCTTTTTCACAAGGGATGAAAAGTACGAGGATCCAAGGGAGAGCCTTTCCCAGGTTGCATGGGATACAGTGATAGATGATTGGTATTAACTCatcaaataaaagctaaaatatatatatatatca
>XM_022684035.1
tatatatatatagtatacataGTATACTAGTATAAAAGGCTTACATGGGAATTGATTGGGTTTGtctatattatattgtttagACACAGTATTACTGAGTACGTAGGCTGCACTGCTGTAGAATGTTAGTGTGAGTGTTCTAAAGGTGATGATGTCATCAGCTTTTTTTGATTGGCTGAGTGTTTTAAAGGTGATGATGTCAGGAACCAGCATTCCGACGGGTATAAATAGCTGCTTGCTGGAGTTTTTGGTCTGTTGGATGTTCGGTGTTGGAGAGAGCAGTTCGTAAGAATAGTGCTACCCATAGCTACAGACAACTAGACATGGTGCAGATGCTGAAAGCGTTAATCGTTCCAGGTGTGCTTGCCGTCGCcggctgctgctggtggtggtatAGCTCACGGAAGAAAACTGGAGGTACTGGCCAGGACAGTGAGGCGAAGGAGGATGTGCTTTCTTCCTGTAGTGGAGAAGAGCAATGTGCTCGGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTCCCCCTTCAGGACCGTGTGGATGACAGCAAGCCAGCTGAAAGCAGTGAGGGGAAGAGTCAGCTTGACGAGCCATCCACCATCATAGAGGATGCTCAGGCTGAAGACACTTTAGTGTCTGCTACAGAGCTTCCAGAGCTCATTGTAGTCGATGACCTATCTTCCTCTTCTGAAGATGGACAGTGTTCTCAGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTTCCCCTTCAGGACAGTGTGGAAGACAGCCAGCCAGGTGAAAGCAGTGAGGGGAAAAGTCAGCTTGACGAGCCATCCACCATCATAGAGGATCCTCAGGCTGAAGACACTTTAGTGTCTGCTATAGAGCTTCCAGAGCTCATTGTAGTCGATGACCTATCTTCCTCTTCTGAAGATGGACAGTGTTCTCAGTCTGAGACTAGAGCACCTGTCTCAAGCCCAGAGGAGCTTCCCCTTCAGGACAGTGTGGAAGACAGCCAGCCAGATGGACAGTGTGCTCAGTCAAGTCCAGAGGATCTCCCCCTTCAGGACAGTGTGGAGGACAGCCAGCCAGAAGTGAGCGGTGACGGAAAAAGTCAGCTTGAGGAGCTTGAGGTGCCAACCACCATCAAAGAGGATCCTCCTACTAAAGACATACCATCATCCTTTCTGGGACGAAGGGCAAAACCCCTGGTCCGTTCCACCATCCTGCCTAAGAAGCCCTTTTTCACAAGGGATGAAAAGTACGAGGATCCAAGGGAGAGCCTTTCCCAGGTTGCATGGGATACAGTGATAGATGATTGGTATTAACTCatcaaataaaagctaaaatatatatatatatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684034.1 True 1586 mRNA 0.48 2 36689599 36691324
XM_022684035.1 False 1358 mRNA 0.48 2 36689599 36691324

Neighbor

gene id symbol gene type direction distance location
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1426191 35168540 ~ 35263408 (-)
ctso NA coding downstream 1522374 35147631 ~ 35167225 (-)
aga aga coding downstream 1903932 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 1957763 34727162 ~ 34731836 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 1981543 34676126 ~ 34708056 (-)
LOC107197706 NA coding upstream 98705 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 102058 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 130959 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 136567 36827891 ~ 36836649 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 260557 36951881 ~ 37003635 (-)
G210014 NA non-coding downstream 71791 36617584 ~ 36617808 (-)
G210012 NA non-coding downstream 185704 36503639 ~ 36503895 (-)
G210004 LOC108438453 non-coding downstream 343776 36339313 ~ 36345823 (-)
LOC103047198 NA non-coding downstream 357850 36317651 ~ 36331749 (-)
G209993 NA non-coding downstream 521567 36133130 ~ 36168032 (-)
G210065 NA non-coding upstream 42466 36733790 ~ 36734206 (-)
G210074 LOC107712756 non-coding upstream 74090 36765414 ~ 36767551 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding upstream 78345 36769669 ~ 36770997 (-)
G210110 NA non-coding upstream 113807 36805131 ~ 36805452 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding upstream 124347 36815671 ~ 36822106 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 1930508 34709771 ~ 34759091 (-)
egf NA other downstream 2033115 34620461 ~ 34656484 (-)
G209660 NA other downstream 2415006 34234918 ~ 34274593 (-)
G209640 NA other downstream 2476750 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 3084610 33602099 ~ 33604989 (-)
G210059 NA other upstream 19096 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 117983 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 473710 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2836309 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2922391 39613715 ~ 39632176 (-)

Expression


Co-expression Network