LOC103023303


Basic Information

Item Value
gene id LOC103023303
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36827891 ~ 36836649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684037.1
GGGCATAAACCACACTCTTGTGGAAAAAGCTCTTCAAGCACTTGATATCACAGACAGTGGTGTTGTCACTCATGATGACCTAAAGTCAGTCCTGAGCAGTTTCCTTTTCCCAATCAGTGACAACACTTTTCTGAGTCTCTTGAGCAGGTTTGGGCTGAACCCCACAGAACCTGTGGAGTGGAGAATGTTCATTGATCTGTTCAGAGAAAAGGAACAGATGCTAAGTGTTGGAAAAGACCCAGATCCTTCTACGCCTGACTTTTCCAGTATTGAAGAAGTCTTACCAAGGTTACAAGAGCAGATACTTAAGgtttttcctcttctgaagaAAGGTTTCCTGGTATTTGATGAGAACAGAATAGGAGTGGTCAGCAAAGCTGATATGCGGCGAGTTCTCGAGGGTTTGACCTTCAGGCTGACGGATGAGCAGTTCAGAGGGCTGATAGATCTCATATATGTAGGAAACTCAGGAACTATCTGCTACCAGCCCTTGTTGGACTTTTTCCAGCAGCAAAAAACATCTGTGgatGAGAAGCAGTATAGCAAGTTTACAGACCAGACAGACACCCAGTCTCAGCCTTCTACTGCACCTCCAACAGCCACTGCTGCCTGGAATACAGTGGAGGGGATTCTTAAAGAGAAGCTGAATGAGCAACATGACTTGTTTCTGCAGTCTCTAAGCCAGACAGACCCAACTCAGAGCTGCAAAATCCCTATTGAAGCCATGAGgacactgctccagcagtatgggTTACCTCTATCTGACAGACACTTCAATAATCTCTGTGAACCATTCACTGAATCTGGAGAAGTGAACTACAAATTGTTGCTGGTCAGCCTTGGCATCTCCATGAAGAGAGACACCATAAAGTGTGCTAACAAGAGTCCTAGCCCAAGAGAGAGAAATGAGAGTGTTTGTGGAGCTCATGCAGAGACCATGAGAAGACAAGCTGTGGTAAATGTTGTTCTGAGGAAGCTCAGAGACAGGCTGCAGGTGCGTGGGGTCACTCTTGAGCACTGTCTAAAGGCCAATGGCAGAAGTTCCGCAGCAATACTTAGCTTGCAAGACTTTCAGAAGATTCTGGACGAGTGTAGAATTTCCCTGCAGGAATCTCAGTTTCAGACCCTCATCCAGGCTCTTGGTTTCTATGATGGACAGGTCTCTTTTACTGAGTTTGTAGCCAAATATGAAGAGTCCATATCAAAAGACAATAATGAAGAGGAAAGAAGAATACTGAACTATATTGAAGCCAACAGCTTTATGTCTGCTGAGGACTGTTTCAGTCAGCTTGAGAAGAGGATAAAAGAATGTCATGGGGATGTTTTAACAGCGTTTCGTCTGATGGACAAGAACAGAGATGGGCTGGTGAATCAGACTGACTTCCGAGTTCTGCTTGACAGCTTGATGTTTGTCACTAAGGAAAAGGAGTACCAGAGGGTGTTGGAGCTGATGGGATTTAAGCCTGGCTCCAATCTTAACTACACTGAGTTCCTCCACAAGATCCGGTCTaatgagaaaaacaaaatacagccCATCGCTAATATGACAGATGATCAGTTGCAGGAGCATGCATGTGACCAGGTTCATGCCTATTTGGTGGACAGTGCACGCACAGGATGGTCAGAGTTTTCAAAGGCATTCAACCAGTATGGTGAGGCTGGTGAAACCATAATCACCAAAAATGATCTAAAGAATATTCTTTACAAATACTCCTTACCCATCACTCCAAGAGTGTTTGAGAAAATATGGACAAGATATGACAATGATGGAAAAGGACACATCACTGTGACAGAGTTCCTGGATACGCTGAATATTACACCACAAGAGTTTACAAAGCAACATGATGATCCACCGGACTCCAACCAGACCTTGAACACATCTTGCATGACCCCTCTGATGGACACCACTCTGCACAAGCTACAGGACTGGTTAAAACTTAGCTTTGAGGATGTGTGCAGAAGTCTGGTGGCAGCAGACAAGAAGCATGATGGTCATGTTACTGTGTCAGACCTGCTGTCTCTGTTACAAAAACATGGCTTTCGGATAGAAGAGTGTCAGTTATTGCACCTAATCAACAGCATTGGAGTCGATGTCTGTAACAGTAAGCTGTCTTACCTTGACTTTCTGAAGTGTCTTACTGGTCTTGTGGTCAGTAGCAGGCCTGAAGTATCGTCTCAGGTCAGTCAAAATCTGAAAGTCAGGTCTACTACAGCTGGAGAGGATGTAGAAGAGCTCAGCCCTGAGAGAGCTTTACAGAGAGTCAGAGAACTGGTCACCACCTCCTCACTTACTCTCTCCAAGGCTTTTAAAGCATTTGATAAGTCTGAAGATGGCAAACTATCACAGTCCGAGTTTCGGCGGGTGCTCGACCACTTCTGCGTCAGGCTCTCTGATGTGCAGTTCAGGAAGCTTCTTTCTAAGCTGTCAATCAAAGATGGAGAAGAAACCACGGTGGTCTGGAAGGAGtttatgaatacttttgaccTTTGCAATCAAGAGACATCAAAAGAATGGCTGGAGAAAGTCCAAAGGTTACGCTTCCCTAACCAGGCCAATCCTGTGCCAATCAGCGATATTTTGAAACGGATCCAAGATGTAGTCTCTGGCCACCTTTACACCATCACCAAGGAGATGATGGATCTAGATTATGCTAGCATTAATACCATTTCAAAAGAGCACTTTAAGGTCTTCTGTGACCACCACTTCATGAGACTCTCTGCTGATCAGTTTGAAAAGCTATGGAAATTGTTGCCGGTCAATGCCTATGACAACCTAAATTACCGTGAGTTTCTGAAGAAGTTCAGCGGAGAACTAATAGAAAAGGAAAAGCCTGCAGCACCACCTACTCCTGAACATTTAGGCCTATCAGAAAGCTCACCTGCTGTTCTCCTGCAACGACCCAAAACTGCATCCTGCATCCCTGAACGGAGCAAGTCGTTAAGCCCAGAGCAGCTCAAGCGTCCCTCCACTGTATGTGGGAGGCTTTCTGTGGTCCTGTCATCAGACATAGCTGCTGTAGAGCGGAGGCTACGCTTCAAGATCCGCAGCTGCTGGAGGGAGATCCAAAGGAGGTGCAAGGAGGCCGACACGCAGAGAACCGGAGGGATTGAAATAGAGGCTTTCTTAGatATACTGAGGGACCTCCACATTGACGTAACCCAGTCCCAGTTTGAGCAGCTGTCTGAGAAGTATAACCTGAAAAACAAAGGCCGTCTCTCCTACCCAGAATTCCTGCAGAACTTTGTGCTTATGCTTAAACCTAACGCCCCCACCTTCACAGAGAGACGCAGGCTACACCTGCCCAAAACTCCGATGAGTGCAGGGCCTCTCAGTAGGCAGTGTACGGATGCCTTGCTCAGATTGTGTTCTCCAATCCAGCTACGCTGGAAGTCCATCAAGCGAGCGTTTGTGTTTTATGACAAAGAGCGCACAGGAAAGATTCCTCTCCAGGAATTCAGAAAGGTTTTGAGACAGCACAATGTAAATCTCTCAGAGGAAGACTTCTTTCAtcttgcatctttttttgaCAAAAACATCTCAGGAAATATTTCGTACAATGAATTTCTATGCATTTTTCAAAAATGAGGAGCATAACTTTACCTCTCTCTTCTTTAAAGTGTGGCACACAGATTTGTACCGATTGCCTTAATTATTTAGAAAtgggaatatatattttaaattacttattttgtaaGAGTTAATTAACTAGTAAGAAATGTTATTAAGAACAGCCTACTTGAAAGAGAGTCTTACTTAAAGGACTTATCTTAAACTGATAATGATAAAGACCAAACAGAGGGCATTACCACAGCACTTAATCATGCAGGTTCAATAAAACGCAGAGACAtcttaaaggttttttttttaaaagaaattctATGATATAGTTTTGACGTAGATAGATGAATATTAACTCATGATGTAATACAACAATAATATAAACTGTAGAATATGTTTtgaatatttattgaacatatATATTGAATATTCATGTCAGGTCCAAAGTCCCAGTTATGGCTCTATTGCATAATAGTTATTTGTAAGAATTGTCAGTGACACTGACCTTCCACCTCTTTGTagatgtttttttccccaaagcCTCTCCAATTCAGGAGTTTGGACTCAGTGCAGGACATGAGAAACATGTTTACCTCAAATAAAGAGTGGAACATT

Function

GO: NA

KEGG:

id description
K23851 EFCAB6; EF-hand calcium-binding domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684037.1 True 4174 mRNA 0.43 23 36827891 36836649

Neighbor

gene id symbol gene type direction distance location
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding downstream 23589 36793382 ~ 36804302 (-)
LOC107197706 NA coding downstream 35088 36790029 ~ 36792803 (-)
LOC111195785 NA coding downstream 136567 36689599 ~ 36691324 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1564483 35168540 ~ 35263408 (-)
ctso NA coding downstream 1660666 35147631 ~ 35167225 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 115232 36951881 ~ 37003635 (-)
LOC103034997 NA coding upstream 167259 37003908 ~ 37038731 (-)
eef1g eef1g coding upstream 235937 37072586 ~ 37082206 (-)
polr2g polr2gl,POLR2G,rpb7,polr2g,LOC106604162 coding upstream 247327 37083976 ~ 37086979 (-)
LOC111195788 NA coding upstream 263646 37100295 ~ 37106457 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding downstream 5785 36815671 ~ 36822106 (-)
G210110 NA non-coding downstream 22439 36805131 ~ 36805452 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding downstream 56894 36769669 ~ 36770997 (-)
G210074 LOC107712756 non-coding downstream 60340 36765414 ~ 36767551 (-)
G210065 NA non-coding downstream 93685 36733790 ~ 36734206 (-)
G210120 NA non-coding upstream 34930 36871579 ~ 36871944 (-)
G210169 NA non-coding upstream 271051 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 291045 37127694 ~ 37128205 (-)
G210197 NA non-coding upstream 391612 37228261 ~ 37228612 (-)
G210223 lman2 non-coding upstream 462465 37299114 ~ 37301802 (-)
c24h12orf73 NA other downstream 17395 36809307 ~ 36810496 (-)
G210059 NA other downstream 117148 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2068800 34709771 ~ 34759091 (-)
egf NA other downstream 2171407 34620461 ~ 34656484 (-)
G209660 NA other downstream 2553298 34234918 ~ 34274593 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 328385 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2690984 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2777066 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2806895 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 3096467 39933116 ~ 39940055 (-)

Expression


Co-expression Network