LOC103023613


Basic Information

Item Value
gene id LOC103023613
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36822283 ~ 36827999 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684039.1
TTCCACCTCTTTGTagatgtttttttccccaaagcCTCTCCAATTCAGGAGTTTGGACTCAGTGCAGGACATGAGAAACATGTTTACCTCAAATAAAGAGTGGAACATTTCTTTTGCTGGTTGTGGTTTTTTGAGCGTCTATTATTTTGGAGTGTACGGCTGTCTTTTGGAACGTGCTCATGACCTGGTTGACAGAACGACAAAGATTTGCGGGGCTTCATCTGGAGCACTGATAGCAGTAATGATAGCATGTCAGATATCACCAGAAAAGTGCTATGAAAACCTAATGAAACTAGCTAACGAGGCTCGGAAGGGCACACTGGGATCTTTGCATCCATCCTTTAACTTGCTAAAGTTAACCAGGGACCTCCTGGAACGAGAGCTGCCCAATAACGCTCACATTCTGGCAAGTGGAAAACTGTGTGTGTCCCTGACACGCATTTCAGATGGGGAGAATGTGCTGGTGTCTGAATTTGACAGCAAGAGTGATCTAATCCAGGCTCTATTATGCAGCTGTTTTTTCCCTATCTACTGCGGTGTGGTGCCACCAAGTTATCATGGTACACGCTATGTGGACGGAGCTTTGAGTAATAACCTACCTTATTTCAGTGAGAAGAACACCATCACCGTCTCCCCATTTTCCGGTGAAAGTGATATCTGTCCGTATGATAACCCGTTTTACTTCCACGAAGTCCGACACAGCAATGTTAGCATCTATGTCAACTTTGCTAATGTGCATCGTGTTATCCAGGCCTTCTTCCCTCCAGAACCTGAGATTATGGCAGAGATCTATCAACATGGATACAAAGATGCCTTAATGTTTCTGAAACAAAATGattatttaaaaatggacTCCCCCCTAACGCATAACAACAAATTGTGCTCATTCAGTCATCCTTATAATGCACACAACCTGGCAGTGGGGAACACTGAGCAATTAGTGCCAGCGACAAGACAAAATGGTCtactaaataaacataaagctcACCTGCCTCCTCAGTTCATTCAAAAAGTTTCGTATAGTGAGAGTAAGAAGAAACATGGATGGATAGGTGAACTATTTGTAGTGAGGTTGATCACTTCCCTACTGATGGTGTGTGTTCTGCCTGTGGAGGTGGTCTACTTCAGGCTTCTGAGAGCTGCTGACTGGCTGCCAACAATGCCTTCTGATCTGCTGTGGCTGTGGGGACTGATCATGCAGATGATTGGACTGACTTGCAGGCGACTGTGGTCTAAAGGTTTGTACACACAAACttaaattaactgtaaaattGTACTATTGGACAAGCTAATATGACTACTAATTAAAATGACCCAGAATTTATTTTCTCCTTTAGAAAAACAGCTCTGACGGTTATAACTTCACATCCACTGATCCACAGTTACTGACACATgaaatattagaataaaatttCCATTATAACACTTTCA
>XM_022684040.1
TTCCACCTCTTTGTagatgtttttttccccaaagcCTCTCCAATTCAGGAGTTTGGACTCAGTGCAGGACATGAGAAACATGTTTACCTCAAATAAAGAGTGGAACATTTCTTTTGCTGGTTGTGGTTTTTTGAGCGTCTATTATTTTGGAGTGTACGGCTGTCTTTTGGAACGTGCTCATGACCTGGTTGACAGAACGACAAAGATTTGCGGGGCTTCATCTGGAGCACTGATAGCAGTAATGATAGCATGTCAGATATCACCAGAAAAGTGCTATGAAAACCTAATGAAACTAGCTAACGAGGCTCGGAAGGGCACACTGGGATCTTTGCATCCATCCTTTAACTTGCTAAAGTTAACCAGGGACCTCCTGGAACGAGAGCTGCCCAATAACGCTCACATTCTGGCAAGTGGAAAACTGTGTGTGTCCCTGACACGCATTTCAGATGGGGAGAATGTGCTGGTGTCTGAATTTGACAGCAAGAGTGATCTAATCCAGGCTCTATTATGCAGCTGTTTTTTCCCTATCTACTGCGGTGTGGTGCCACCAAGTTATCATGGTACACGCTATGTGGACGGAGCTTTGAGTAATAACCTACCTTATTTCAGTGAGAAGAACACCATCACCGTCTCCCCATTTTCCGGTGAAAGTGATATCTGTCCGTATGATAACCCGTTTTACTTCCACGAAGTCCGACACAGCAATGTTAGCATCTATGTCAACTTTGCTAATGTGCATCGTGTTATCCAGGCCTTCTTCCCTCCAGAACCTGAGATTATGGCAGAGATCTATCAACATGGATACAAAGATGCCTTAATGTTTCTGAAACAAAATGattatttaaaaatggacTCCCCCCTAACGCATAACAACAAATTGTGCTCATTCAGTCATCCTTATAATGCACACAACCTGGCAGTGGGGAACACTGAGCAATTAGTGCCAGCGACAAGACAAAATGGTCtactaaataaacataaagctcACCTGCCTCCTCAGTTCATTCAAAAAGTTTCGTATAGTGAGAGTAAGAAGAAACATGGATGGATAGGTGAACTATTTGTAGTGAGGTTGATCACTTCCCTACTGATGGTGTGTGTTCTGCCTGTGGAGGTGGTCTACTTCAGGCTTCTGAGAGCTGCTGACTGGCTGCCAACAATGCCTTCTGATCTGCTGTGGCTGTGGGGACTGATCATGCAGATGATTGGACTGACTTGCAGGCGACTGTGGTCTAAAGAAAAACAGCTCTGACGGTTATAACTTCACATCCACTGATCCACAGTTACTGACACATgaaatattagaataaaatttCCATTATAACACTTTCA

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684039.1 True 1431 mRNA 0.42 8 36822283 36827999
XM_022684040.1 False 1332 mRNA 0.44 9 36822283 36827999

Neighbor

gene id symbol gene type direction distance location
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding downstream 17981 36793382 ~ 36804302 (-)
LOC107197706 NA coding downstream 29480 36790029 ~ 36792803 (-)
LOC111195785 NA coding downstream 130959 36689599 ~ 36691324 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1558875 35168540 ~ 35263408 (-)
ctso NA coding downstream 1655058 35147631 ~ 35167225 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 123882 36951881 ~ 37003635 (-)
LOC103034997 NA coding upstream 175909 37003908 ~ 37038731 (-)
eef1g eef1g coding upstream 244587 37072586 ~ 37082206 (-)
polr2g polr2gl,POLR2G,rpb7,polr2g,LOC106604162 coding upstream 255977 37083976 ~ 37086979 (-)
LOC111195788 NA coding upstream 272296 37100295 ~ 37106457 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding downstream 177 36815671 ~ 36822106 (-)
G210110 NA non-coding downstream 16831 36805131 ~ 36805452 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding downstream 51286 36769669 ~ 36770997 (-)
G210074 LOC107712756 non-coding downstream 54732 36765414 ~ 36767551 (-)
G210065 NA non-coding downstream 88077 36733790 ~ 36734206 (-)
G210120 NA non-coding upstream 43580 36871579 ~ 36871944 (-)
G210169 NA non-coding upstream 279701 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 299695 37127694 ~ 37128205 (-)
G210197 NA non-coding upstream 400262 37228261 ~ 37228612 (-)
G210223 lman2 non-coding upstream 471115 37299114 ~ 37301802 (-)
c24h12orf73 NA other downstream 11787 36809307 ~ 36810496 (-)
G210059 NA other downstream 111540 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2063192 34709771 ~ 34759091 (-)
egf NA other downstream 2165799 34620461 ~ 34656484 (-)
G209660 NA other downstream 2547690 34234918 ~ 34274593 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 337035 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2699634 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2785716 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2815545 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 3105117 39933116 ~ 39940055 (-)

Expression


Co-expression Network