LOC111195788


Basic Information

Item Value
gene id LOC111195788
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37100295 ~ 37106457 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684047.1
TATTCCAGTGTAAGTTAATTTGTAATGTGTTGTTCAAAatcatattaacattttctttcaattaACATTGTACCTGCAGGGTAGTGGCGGGTAAATTGAGGGCTGTGTGAGTGGAGAACACTCCAACTTTCATCTTGTTCAGGCAGagTCTCCTTACTTTCAGAACAAGCTGTTGCAGTGGACAGAATAGGCCTTAGGTCAGCTTAGGAGGAGGACAGACTTGACTGGTTTGAATGCTGGTGTCATCAGAGAGAAACAACATTCTGCTTGACCAAGGCTGTGATGATGTCAGGCCCAATTCAACTGCGTGTTGTTATTGAAGATAGTCAAGTTCACAAGTTAGTCCTAGCAGGTGGAATCCCAAGCACTGTAGATGAACTTCTGGCAACAGCCCAGAATCATTTTCATCTCCAAGGAAGTTTTACTGTTATGTACATGGACAAAGATTTTGATGACCAGTTCTTCACTCTAATGTCAACCGATGTGATTAAGGACAAAGACACAATCAAATTGGTTAAAACAGAACCGTCTGTTGTTCTAACATTTACTCCCATCTCTGAGACTGATGCTTCCTCCCCAGCAGCGTCACTGGATCGGTCTTTCCAGGATGATGGTTCTTCAGTGAGTTCATCCGACACAGTCATTATACAACAGCCCCCAGAGCATCGATCTCAACCATGGCCTGTTGATTTTGTGGTTCCCACCTTTTCATTTAATGTGGAAATGCTCCTCCAAGCAGGATGCAAGGCTTATGAAAGTGATGGATCACTCCTTCAGAATCCAAGCATAAACTCTGACATACTAGAGAAACTTGCTGAAGCAATATTCCACTACACTGCCTACCCCACTGGTCTGCAAATACAGGCAGTTGTAGAATCTCTGATCAACAAGTATCCATGCTTAAAAGAGCCTGGAACCTCCTTTTCTGGAATGTATGGGTGGCAGCAGCGTCTAAAGTACAAGATGGCAAACTACCGTTCTAAAATGAGAAAACAGGTACCTTGTCCTGAGCTTGATATCAACTCCTTGAAAAGGAAGTCCCCTGGTGAGAAAAATCCTGCTAAAAATTGCAAGAGACCGAAGAGGGCAGAAGTGAACTACCTTCCTCCACACCCAAGTGGAGAAACGAGCAACAGTCTGGAGAAGGAAAGACAAGAGCTTCTTTATGAagtaaagaagaagaacaacacCAAGGTTATTCAAGACAAAATGGCCAAAACGTTCTCCTATCGAAGGATTGAGGTTGTGAGTGGTAGTCCAGCGGCGGATGAGTTCAGAGAGAGATGGCCTGCTTTGTTTTGTGAAGCTGAGATCAAAGAGGAATTCAGGAGAATAACTACGGTTTCCTTAGAGCAGACCTTCATGCGCAAACTTGACTACTACACTCCAAAACTTCTTGCCCTGATGAAGGTCAAAGGAGGTGTCGTGGGGACCAAGCTGAGACCACACTTGGACAAAATGTGTCAGGATCAAAGCATTGAAATGAGACGAGATGCTATTATCCGCAGCCTCATACTGTACCTTggtgagaaagaagaagaacttTTTAAAGATTGCCTGGAAGATAACCGCAGTGACGTGACTGAACACCTCCTTAAGATATTGGTCATCCATGGTGCTGAGGGAGAGGATCCAGTGGATGTCTCAATCCTTCTTGATGGTGCAGAGATCTTGCCGGGATGCTGCAACACTGCCAAAGCTTGTGCGCTGCTCATGGGGCTAATTTATGCTCTGAATCTGGCATACCCTTTGTCACTGCGATACACTTTTGAGGTGTTCCAGAAGCTTTTCCTGGAGCTGGATGTAATTAAACTGTCCCCGAAGGTACAAGCTTTAAAGTCAAAGTTGCTGTCTTAAGGACTACTGCAATGGCACATACTTCTCAGCTGATGGTACATCCTGATTGACTGgtcagcagttcagttcatttcagtttGCTGACCACTACACTGGACCTTCCTCTCACAAACTGCAGTTTGTTGTTCCATGGGACTGTCCACTGTCCAGACACCCAGACCTTGAATTTCATTTTTAGGTATGTGCTTGGCCCCAATGGCTGCAGTGATGTACTGTTTGCATTGTTGTGGATAATTTACAGGATTCTGAGTTCCTTTTCTTGACTGTTTTATGGGACATTGCCCAATTTTCCCTAGTCCTCAAAGTTTGCTTTGTAAGTCATGCCTCAGTTCTTATTGGTAAGTCCTGACTTTTGCCCAGGTTCCTGTCGCTACAGTTGTAAAGTAGGTATTTCTTTACAGTGAGCCATTTAATTTCAAATGACTCATACTGCTCTCAGCTGAATGTACAAGTGATACAAAGTAATTCCAcagatgttaaaaaaatgttttaatgtgtttagtgCACAGTTTCAGACTGTTTGAATGTTTTAATTACACTCCATTGTTTTACTGCATTCACTCTCAAATATTGGTCATGCGAACATTAAGTGGCTTCTAATATTGACCAAATAAATGGttgaaatata
>XM_022684048.1
CCAGGAAAACCAGTTTTTATCTGGAGAGGAGCTAAGACTTTCAATACTACTGTACTCTGATGATTTTGAAATATGTAATCCGTTAGGAACCTCTCGTAAGAAGCACAAAGTAACCAGTGTTTACTGGGTTTTGGCTGATATTCCGTCTGTATTAAGGTCTacattatcatcaatttatGTGGCTGTTTTGTGCAAGGCAGATGACATAAAGAAATTTGGCTATCCTCGAGTGCTAGAGCCATTGTTAAATGATTTGAAAAGCTTTGAAGAAGAGGGACTTTTTGTACCCTGTTTGGGAAAAATCATAAAGGGCACAGTATTTTCTGTGATTGCTGATAACCTTGGAGCCCACTCAGTTGGGGGGTTTATTGAAAGTTTCAGTGCATCATACATTTGCAGATTTTGTATTGGAGAGCGGTCCCAGTTTCAGGAGCTTGAAGTCAGAACTGGAGCATTTCCCAGCAGAACAAAACACCACCATCAGTTAGATGTTGAAGCAGCACTGGCTAGTAACACCCATAGCCATGGCGTTAAGAGGCACTGTGCCATTTCAGAAAGGCTGAGTCATTTTCATGTGACAACAGGTTACCCACCTGATATATTGCATGATTTACTGGAGGGTATTGTACCTGTAGAACTGGCGTTGTGCTTGGACATCTTGATTAAGAAAAAGTATTTCTCTCTTGAAGAGCTTAACTGCATCATCCAGCGGTTTCCATATAAGTGGAAAGACAGGACAAACTGTCCCCAAGTTATACCACCAACATTTGCCTTGCGTAAAACCATTGGTGGAAACGCACACGAAAATTGGTGTCTACTGAGGCTGTTACCATTTATGATTGGCCCCAAAATACCTGAAGAGGAAGAGACATGGCAGTTGTTGATGACACTCAAAGATGTTGTTGAGTTGGTGATGTCCCCTGCCCATACAGATGAAAGTATTGGCCACTTAGATAGCCTAATTGCTGAGCATAGATCTAGATTTATCAGTGCTTTTCCTAAGGAGAAATTGATTCCAAAACACCATTTTGTAGAGCATTATCCAGGACTTATTAAAGCTTTTGGCCCTCTAGTGTCCTTATGGACAATGAGGTTTGAAGCAAAGCACCACTTCTTTAAGAAGATAGTGAGACACACTAACTGCTTCCGTAACATTTTGAAAACTATGGCAAGAAAACACCAGTGCATGATTGCATACCATCTCCAcggattaaatgtaaaaaaacgtGCCGTTTCTGTATCAAGCGTATCAAGAGTTCCACTACAGGTAgtacatgaaaacatacaagAATTCATATTGCAGAAGTTTCCTGAAGAAGCAGCTGTTCATTTCACAAGCAAAGTAGAATTTCAGGGCACCAGTTACGGTATTGGCATGATGCTGGTATATAGATCCACAGGTGGGTTGCCTGACTTTGCAGAAATACTGCAAATTATTGTTGTTCAAGACAGCTTAGTTTTTGTAGTTAAATTGCATAGTGCGTGGTACTTTGaacattttagatgttttaagCTGGAGTCCACAAGCATAGTCAAGGTAATAGACCAGTCAGAACTTGCTGACACACACCCATTGGCTGCCTATGCTGTGGAAGGCAATCGAATGGTTTCTCTGAAACACCACATCTGCTTATCAAACTAGACATTCTGCTTGACCAAGGCTGTGATGATGTCAGGCCCAATTCAACTGCGTGTTGTTATTGAAGATAGTCAAGTTCACAAGTTAGTCCTAGCAGGTGGAATCCCAAGCACTGTAGATGAACTTCTGGCAACAGCCCAGAATCATTTTCATCTCCAAGGAAGTTTTACTGTTATGTACATGGACAAAGATTTTGATGACCAGTTCTTCACTCTAATGTCAACCGATGTGATTAAGGACAAAGACACAATCAAATTGGTTAAAACAGAACCGTCTGTTGTTCTAACATTTACTCCCATCTCTGAGACTGATGCTTCCTCCCCAGCAGCGTCACTGGATCGGTCTTTCCAGGATGATGGTTCTTCAGTGAGTTCATCCGACACAGTCATTATACAACAGCCCCCAGAGCATCGATCTCAACCATGGCCTGTTGATTTTGTGGTTCCCACCTTTTCATTTAATGTGGAAATGCTCCTCCAAGCAGGATGCAAGGCTTATGAAAGTGATGGATCACTCCTTCAGAATCCAAGCATAAACTCTGACATACTAGAGAAACTTGCTGAAGCAATATTCCACTACACTGCCTACCCCACTGGTCTGCAAATACAGGCAGTTGTAGAATCTCTGATCAACAAGTATCCATGCTTAAAAGAGCCTGGAACCTCCTTTTCTGGAATGTATGGGTGGCAGCAGCGTCTAAAGTACAAGATGGCAAACTACCGTTCTAAAATGAGAAAACAGGTACCTTGTCCTGAGCTTGATATCAACTCCTTGAAAAGGAAGTCCCCTGGTGAGAAAAATCCTGCTAAAAATTGCAAGAGACCGAAGAGGGCAGAAGTGAACTACCTTCCTCCACACCCAAGTGGAGAAACGAGCAACAGTCTGGAGAAGGAAAGACAAGAGCTTCTTTATGAagtaaagaagaagaacaacacCAAGGTTATTCAAGACAAAATGGCCAAAACGTTCTCCTATCGAAGGATTGAGGTTGTGAGTGGTAGTCCAGCGGCGGATGAGTTCAGAGAGAGATGGCCTGCTTTGTTTTGTGAAGCTGAGATCAAAGAGGAATTCAGGAGAATAACTACGGTTTCCTTAGAGCAGACCTTCATGCGCAAACTTGACTACTACACTCCAAAACTTCTTGCCCTGATGAAGGTCAAAGGAGGTGTCGTGGGGACCAAGCTGAGACCACACTTGGACAAAATGTGTCAGGATCAAAGCATTGAAATGAGACGAGATGCTATTATCCGCAGCCTCATACTGTACCTTggtgagaaagaagaagaacttTTTAAAGATTGCCTGGAAGATAACCGCAGTGACGTGACTGAACACCTCCTTAAGATATTGGTCATCCATGGTGCTGAGGGAGAGGATCCAGTGGATGTCTCAATCCTTCTTGATGGTGCAGAGATCTTGCCGGGATGCTGCAACACTGCCAAAGCTTGTGCGCTGCTCATGGGGCTAATTTATGCTCTGAATCTGGCATACCCTTTGTCACTGCGATACACTTTTGAGGTGTTCCAGAAGCTTTTCCTGGAGCTGGATGTAATTAAACTGTCCCCGAAGGTACAAGCTTTAAAGTCAAAGTTGCTGTCTTAAGGACTACTGCAATGGCACATACTTCTCAGCTGATGGTACATCCTGATTGACTGgtcagcagttcagttcatttcagtttGCTGACCACTACACTGGACCTTCCTCTCACAAACTGCAGTTTGTTGTTCCATGGGACTGTCCACTGTCCAGACACCCAGACCTTGAATTTCATTTTTAGGTATGTGCTTGGCCCCAATGGCTGCAGTGATGTACTGTTTGCATTGTTGTGGATAATTTACAGGATTCTGAGTTCCTTTTCTTGACTGTTTTATGGGACATTGCCCAATTTTCCCTAGTCCTCAAAGTTTGCTTTGTAAGTCATGCCTCAGTTCTTATTGGTAAGTCCTGACTTTTGCCCAGGTTCCTGTCGCTACAGTTGTAAAGTAGGTATTTCTTTACAGTGAGCCATTTAATTTCAAATGACTCATACTGCTCTCAGCTGAATGTACAAGTGATACAAAGTAATTCCAcagatgttaaaaaaatgttttaatgtgtttagtgCACAGTTTCAGACTGTTTGAATGTTTTAATTACACTCCATTGTTTTACTGCATTCACTCTCAAATATTGGTCATGCGAACATTAAGTGGCTTCTAATATTGACCAAATAAATGGttgaaatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684047.1 False 2485 mRNA 0.43 6 37100295 37106457
XM_022684048.1 True 3869 mRNA 0.42 5 37100295 37105060

Neighbor

gene id symbol gene type direction distance location
polr2g polr2gl,POLR2G,rpb7,polr2g,LOC106604162 coding downstream 13316 37083976 ~ 37086979 (-)
eef1g eef1g coding downstream 18089 37072586 ~ 37082206 (-)
LOC103034997 NA coding downstream 61564 37003908 ~ 37038731 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding downstream 96660 36951881 ~ 37003635 (-)
LOC103023303 NA coding downstream 263646 36827891 ~ 36836649 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding upstream 99782 37206239 ~ 37218291 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding upstream 174384 37280841 ~ 37285730 (-)
ccdc69 ccdc69 coding upstream 285613 37392070 ~ 37407429 (-)
gm2a gm2a coding upstream 308135 37414592 ~ 37421150 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding upstream 452237 37558694 ~ 37625939 (-)
G210120 NA non-coding downstream 228351 36871579 ~ 36871944 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding downstream 278189 36815671 ~ 36822106 (-)
G210110 NA non-coding downstream 294843 36805131 ~ 36805452 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding downstream 329298 36769669 ~ 36770997 (-)
G210074 LOC107712756 non-coding downstream 332744 36765414 ~ 36767551 (-)
G210169 NA non-coding upstream 1243 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 21237 37127694 ~ 37128205 (-)
G210197 NA non-coding upstream 121804 37228261 ~ 37228612 (-)
G210223 lman2 non-coding upstream 192657 37299114 ~ 37301802 (-)
G210235 tmed9,LOC108416549,LOC107662005,LOC107664780,LOC107741051 non-coding upstream 202921 37309378 ~ 37314616 (-)
c24h12orf73 NA other downstream 289799 36809307 ~ 36810496 (-)
G210059 NA other downstream 389552 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2341204 34709771 ~ 34759091 (-)
egf NA other downstream 2443811 34620461 ~ 34656484 (-)
G209660 NA other downstream 2825702 34234918 ~ 34274593 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 58577 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2421176 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2507258 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2537087 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2826659 39933116 ~ 39940055 (-)

Expression


Co-expression Network