LOC103024433 (si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091)


Basic Information

Item Value
gene id LOC103024433
gene name si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38050238 ~ 38075468 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684055.1
ATGGATGCGAGTCCTCTGCCTATCGTGGTGATGGAGGCCGGCGGGGCTGAGGAGGAGGGAGAGGCTCAGAGAGTGAAGACTGAGTGCTTGAGACTTACTGAAGAGAGAGATGAGGCTGAAAGGCAACTGAAGCACATTAAGAGAGTTTCCCAAATGGTGATTGAGGAGGTGAGCGTGCTGCAGACGCAGCTGGAGATTGAGAAGTCGTGTCGGGAAAATGCTGAGGCACTCGCTACCAAGCTCAACTGTGAGAACAGGAAGCTGAAGTATCTGAGCCTGTCGTCTCGGCCGTGTCTCGATGAGCTGCTGCCCAGTATCTCTGACTGCATCTCCCTGGAGGAGGAGGCAGAGCCACAGGATCACAGCCCAGACCCTTATGCCCAGTACCAACAGCAGGTCAAAGaTCTTCAGGAAACGGTGAACACTTTACTGGAGGAAAAGAAGCAGTTAGCCTGTCAGCTACAGGAGCAGAAGAGACAGATCGAGGAGCTGACAGCACTTACTGAAAAAGAGCAAGCAGAGATGAAGGAACTTCACAAAACCATTGAGCAGCAAACCAAGACCATCAAGAGATTTAACAGAGTGTCCATGATGGCTGCACATGAATATGAGGGGATGAAGGAGCAGCTGGATCTGGAGCAGAGCCTGAGGCAGAAAGCAGAAACCTATGCACATGAGaTGTTGGTGAAGCAAAAAGAGGCAAACAGACAGAGCATGATTCTCCTGCAGCAGGCAGATCCCACTATTCAGCTGCTCAAAGCTCTGGAGGATGTCGCCAATGTAACCAAAACACTGGAACAGGAACGGCTGCAGCATCAAGAAAAGGTAAAGGCTCTGGAGGCTGAGCTGGATCAGTGTGCCTTGCGGAAGCAGCTAGCACAGCTGCAGAAACAGCTGGAGTTGctggaggaagagaaaaaggaCACAGAGGAGAGGCTGCAGGAGGAGATGAAGAAGTGCAGTGATTTGGAGTGTAGAGTGAACGAGCTGCAGGAGTCTCAGAGGACCTGTGTTTCAGCCTCGGGTCCATCTCCTGGGACCGCACCTCCCCCTGCACCTCCTCCAacgccccctcctcctcctcctccaccccctcctccccctccacccccaccccctccctcTCGCTGCAACCCCCTCAGCTCCCTCATCGCAATCATGAGGAAGTCTTCCAAGGGTGGAAAAGGCTCTCCGAAATTAGAGCAGGCTCCAGCGAATGAAGGTGTGGATGATGTCAAATCGAAGGCTGTCAATGAAATGATGGAAAGGATCAAGCATGGAGTTGTGCTCAGGCCTGTGAAAGGACAGGACACCAAGAGATTTGGAACAAAGCAGCCAAGTCCAGCCTCTGAGGAGAAACACCAGGAGAGCGCGATGGAGGAGCTGAAAGGCATTCTGGATACAGTTAAAAAGAGTCCCAGTCGTGGATTCCAGGAAACATTGCCTGTTAAAAAAGACAGTGAACTTGAAGTGATTCTGAGGAGGAGACGCAAGCAGGCCTGTGATCCAGCTGCAGCAGATGAGATGGATGGTCAGATCAGCAAGGTTTCCTCGAACGATAGCCTAAATGGTCGACACAGTTCTGACTCAGGTAAAGACACGGACGGGCCAGGGAGTAGCTCTCTCTCCACCAGCGACACTGGCTCCAGAAGCAGCACAGACTCCGGCAAAGAACCACCCACAGCCCGCAGGAGCTCAGACTTCGGCACAGAGCCAAGCGGAACCAAACCGAGAGCTTCCGTCCAGAGATCCCTTTCTGAGAAAAGACCTGCAGAACTGGTCAACAACAAAAGCCCCTGCAACCGGGTGCAGAAGaatgaagaggaagagaagagtGAGCAACCCAATGGGATCAGCCACCCCACACACAATGAGGACCTGCAGGCCTCTCTCAGCTCCTCAGCAGATGGCCCTAACGATGCAAATGGCAGCGTGGACGCTGAGTGTTAACGGAAGGCAAGCACTAGCAGGACAGCTGCAGCATTTGCACAGaaatcttgttttttaatttctatttattattcCAAATTATGCACAGGTTCAGTTTTAGGTATTCAGAGCACAAACTGTCTGATTGTGTGGGTTTGTATCCACTAATGAACACCCTTTATTTAGATCTATCCTACATTTTGGGAACTTAAAGGAAACCTACTTTATTCCTGTTTGGAAATGATCATTTGCTCCTCTGTAAAGTATCTTTTGGAAAGTGGGTTTTGCCAGAACGTGTACCATGAACTTGCAAGAAAATGCAACATATGAAATGCATTGCTACAAAGCCTTTCCAAAGGAAATATTCAAACACACAAAGTGACCCCTTTTCTGTTTGCATCAGCCATTAGCAGGATTTGCCAGAGACTTATAGAAGCAATCCTGCACGGCAACTTGTATGGGACATTATCCAAAGTTTATTCTGCCTAGTACAAAGCTTAGGTAATGTCTGAGTTAGCTCAGATGTGAATTAAGCAAGTAATTTTCCAGATTTTTCACAGCAGGTTGTTTCGTGCCTCCTGCACATGCAATGCAGGTGCTACCCCTTGCCTAAACCACAGAACTTTCCTGTAGTCAGAAAATCTCCATCAGTATGTCACGTGTGCAAGAGCAGCTCCAGATTGTCCGGACCTGACAGATCCTACTCTTGAATACAGTAATTTACCATAATTTTATGTTGTTCAAACACAACCTTTAAATTTGTCCATGATTTTGTGTAGTGATGATTATTAGATCTAAAATTGATATCACAAGAGTTTGACTGTAATAAACCtgtattaatcttaatcatgaTGTGCACTAAACATTAATAAGGAAAGAATTCACATAAAACATGATGTTGCAGTTGAGAGGCAATTCTCTAATCTAGAGAAAAACATCTTTGTATTTAGCCTAATTAACACAACACCTCAAGTTGGTCATCAGCTCATCTAGCTATAAAGTGCCTAGAGGGCATTAAGGCCTTAAAACCTCAGTTAAGGCATTAAGACCTTGCTTGTAGAATTTAGGTCAACATGATGCAATTTGGCATCATACATGCCAAAAATACCACATGCACACCATAAATCTAACAACAAACAACAGCTAATTACCTATCGCAATAACAAAAGGCTGTACGTTACTACACCGCTAAGCTCATCATCAGCTTGATTTCCATgttcaaaaagtaaaatgtaatcAAAGACCATTGTTTACAATGCAAAAACTCAATCCTGAATCAGACTGAAAACAGTACAGCACACCAAGGCACTTCTGCTGTTATATCTGAGGCTCTGTGGTTCAGTTTCTGAACTTTCCTCATTAGATGCAAATACAAGTCATGCAAGTGCTCTGAAAGACATAGATAAGCATGTAGGAGATACTGTAGATTAGGATATATACAATCTACCTCCTCCTAGACCAACTCACCTCCTAGCTATCTGTAATTGTACCGGTTCTTTACATTGTGACAATAAAGTGAACGTTCTTAAGGATTGACATGCTATTCTCCAATGTCTTCCACCTGTTTTCCCGAGTTTTTGCACTGCAGTGAATTCACTGCTTGGGGATTGTATGACATTTGCTTGGTTTCACATGTAATGTTGTGTAATGTTAAGGTAGAGGTAGGTGGGCTGTAAGGGGTTTTTATAACCTCTCCAAACAATGCAATATCATCTGATCATTCTTTTTATGATGTGCAACAGCCAGGAGATAGAGGAGATTGTCACTGCTTTCACAGAGCGATACTGTATCAGCCTGTAAAGAATTGAACTGTTGTGCTCTACTAGGGTTTATTACATCACCCACTGAGATCTGAATTCTGATATACTGTACATGGCACATTAAAACTGTTTCATATTAAACTTGACAATTTTAAGAGACTGTTCTTGTCCAGCAATGAACTGACCCAAGTCAGTAACTGTGGGATGTTTACTGGCCTTACTGCAACACCATACGGTTCTGCTCCGCCTGCATGCCGTCCAGGCTGTAAGAAGTTAAGGATTCACTCGGGATGCTATCTGACTGTTGTGATCTTAAAACGTGTGtatgtttgcgtgtgtgtgttttgaagcTACAAAAAATGAGTGcaccttttaatttaaaaatcatgttaTTCTCCTGCACCGTACCTTTTAAACTGGACTGAATAAACATGAAGAACTA

Function

NR:

description
PREDICTED: shootin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684055.1 True 4131 mRNA 0.45 19 38050238 38075468

Neighbor

gene id symbol gene type direction distance location
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding downstream 1756 38044021 ~ 38048482 (-)
glra1 glra1,LOC107717398,LOC107662012 coding downstream 273522 37694053 ~ 37776716 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 424299 37558694 ~ 37625939 (-)
gm2a gm2a coding downstream 629088 37414592 ~ 37421150 (-)
ccdc69 ccdc69 coding downstream 642809 37392070 ~ 37407429 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 661 38076129 ~ 38079211 (-)
LOC103023908 NA coding upstream 3919 38079387 ~ 38109064 (-)
LOC103036455 NA coding upstream 36577 38112045 ~ 38128787 (-)
LOC103038351 NA coding upstream 57424 38132892 ~ 38134329 (-)
htr4 htr4,LOC107664776,LOC107662017,LOC108269380,LOC107598324 coding upstream 72355 38147823 ~ 38256668 (-)
G210445 NA non-coding downstream 15769 38025424 ~ 38034469 (-)
G210372 NA non-coding downstream 192865 37857038 ~ 37857373 (-)
G210365 NA non-coding downstream 224418 37825219 ~ 37825820 (-)
G210347 g3bp1,LOC107683011 non-coding downstream 366736 37677456 ~ 37683502 (-)
G210339 NA non-coding downstream 403369 37646192 ~ 37646869 (-)
G210448 NA non-coding upstream 47027 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 142807 38218275 ~ 38218728 (-)
G210457 NA non-coding upstream 196157 38271625 ~ 38271862 (-)
G210477 NA non-coding upstream 274491 38349959 ~ 38372198 (-)
G210506 NA non-coding upstream 444695 38520163 ~ 38520494 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 845853 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 1239742 36809307 ~ 36810496 (-)
G210059 NA other downstream 1339495 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 3291147 34709771 ~ 34759091 (-)
egf NA other downstream 3393754 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1452165 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1538247 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1568076 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1857648 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2285790 40361258 ~ 40363237 (-)

Expression


Co-expression Network