LOC103022549 (tmem216,LOC108416639,LOC108268819)


Basic Information

Item Value
gene id LOC103022549
gene name tmem216,LOC108416639,LOC108268819
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38076129 ~ 38079211 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684058.1
TTGATGTCTTTGCAAGaggaaattttaaaaataagggttTACTGAGTGTTCTTTCTGCTTGCATGCACCAGCGTGCTGAAATAACCCTCCTACATCAATATATTTAAGATAATTGGATTGAATATAGATATCTTATAAttgtattagttatatttagaAGATTTTTGAATTTGGGTAATTGAACACTGACGCAATAAATGAAATCACATTACGAAACATGCTGGTAATTGCATTAAAAGATGTTTCTCAGTTTTAccccaattttattttttcttttaaactgaaagcgTGTGCTCGTGCGTGTGTGCGCTCTCGCTCTTACGCTGTTTCTGATTGGATGGACTTAAGTCAGACGCTAGCAGGTCCCCGAACTCTGATTGGACAACTGTCCAGTTACCGCCCTAGGATGACGCCGTCTCCATGGTATCCAAAATGGCGACCCACGGAAAGCACCCCATTTTGTCCTCCACACCCCTGCAGGTCCTCTTTTATTTAAACAGCTGGTATTTTGCTGTGTTCTTCATCGCTGAGatcttaatgtttatttataaaggaGTGTTGCTCCCATACCCGCAATCAAATCTCATACTTGACATTGTGCTGCTTCTTCTCTACCTTGGCCTTGAAACCCTCAGACTGTTTTACGGCTGGAAGGGAAACCTGTGTGAGCGCACTCTGACGCTATCCATTAGCATTGGTGTCCTGGTGCCTTGTACTGTGCTGAGTGTCTATTATCTGCTACTACAGACTTTTGTTCTTCGCCTCGAGTTTATCCTCAACGCTGTATTGCTGTGCTTCTATGGTCTGGAGCTGATTCTGGGTCTTATAACCATCTCAGCTTTTGCCAGgGCTGTTGTTTACTAGACCTGCAGGTGCTGATGAAGAACAGTTTTGTGCGTTCCTTGGGTGTTAGCGGATTTTCGGTGTGCCAATGTATCATcactacatacagtacatacagagTACAGCACTTGGATCTGCACGACTCTGCACACTGCTCCTTAACTGCTGTTAAATATTGGTTATATAATGACCTTTGACTTTATGACTTTAAGTCGTTGCATTTATTTAGTGTACACTTTCTTTTTTGTACAGATAAATGTGGTTTGTATGGTgtctttttgtaataaaataaaacttttttttttt

Function

symbol description
tmem216 Involved in cilium assembly. Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in several cellular components, including cell projection; cytoplasm; and cytoskeleton. Predicted to be integral component of membrane.

NR:

description
PREDICTED: transmembrane protein 216-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19385 TMEM216; transmembrane protein 216

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684058.1 True 1149 mRNA 0.40 6 38076129 38079211

Neighbor

gene id symbol gene type direction distance location
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding downstream 661 38050238 ~ 38075468 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding downstream 27647 38044021 ~ 38048482 (-)
glra1 glra1,LOC107717398,LOC107662012 coding downstream 299413 37694053 ~ 37776716 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 450190 37558694 ~ 37625939 (-)
gm2a gm2a coding downstream 654979 37414592 ~ 37421150 (-)
LOC103023908 NA coding upstream 176 38079387 ~ 38109064 (-)
LOC103036455 NA coding upstream 32834 38112045 ~ 38128787 (-)
LOC103038351 NA coding upstream 53681 38132892 ~ 38134329 (-)
htr4 htr4,LOC107664776,LOC107662017,LOC108269380,LOC107598324 coding upstream 68612 38147823 ~ 38256668 (-)
slc26a2 slc26a2,LOC107662016,LOC107575649,LOC107664781 coding upstream 273272 38352483 ~ 38361729 (-)
G210445 NA non-coding downstream 41660 38025424 ~ 38034469 (-)
G210372 NA non-coding downstream 218756 37857038 ~ 37857373 (-)
G210365 NA non-coding downstream 250309 37825219 ~ 37825820 (-)
G210347 g3bp1,LOC107683011 non-coding downstream 392627 37677456 ~ 37683502 (-)
G210339 NA non-coding downstream 429260 37646192 ~ 37646869 (-)
G210448 NA non-coding upstream 43284 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 139064 38218275 ~ 38218728 (-)
G210457 NA non-coding upstream 192414 38271625 ~ 38271862 (-)
G210477 NA non-coding upstream 270748 38349959 ~ 38372198 (-)
G210506 NA non-coding upstream 440952 38520163 ~ 38520494 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 871744 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 1265633 36809307 ~ 36810496 (-)
G210059 NA other downstream 1365386 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 3317038 34709771 ~ 34759091 (-)
egf NA other downstream 3419645 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1448422 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1534504 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1564333 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1853905 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2282047 40361258 ~ 40363237 (-)

Expression


Co-expression Network