LOC103029855


Basic Information

Item Value
gene id LOC103029855
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40076837 ~ 40097960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684133.1
ctctctcccctctctctctctttccacctctctctctcttttttttttctctgtctctctaccttcgtccctctcctctctctccctccgtcACTTAGCTAAACTTGTGTCCAATTTGAATAAGACCTCTTTCTGCTCCCAGCTCCCAAGCAGTCAAAAACAGCAGGATCCAGGATTTTCAATTCACCCAAGCTAACCAACGGCAACTGCTGCTAAAGCCCTGGGTCATTATAAGGAGCTAAGACACAGCAACAAGAGCAGAAGACAAGGACAGGGACTGCATTCATTTGGTAAAACATGGCTGCTTTTCTTCTGCTGTGTGTCTGCCTCGGGGTTGTTTCTGCATCAGTGCTGTTTGGAGATATGGATGATCAGGACAGCTTGCTGAGTGTAAGCATCCCAGTGGAGCAGCCACTGCGTCCCCTGCTGGGGGGGACGGTCATCCCCTGCTACTTCCAAGACAACACAGTTCACGACCCCGGAGCCCCCACCATTAGCCCCCTGTCCCCACGCATCAAGTGGAACTACATTTACAAGGGTAAAATCAGCCTGATCCTGGTGGCCACTGAGAGAAAGGTGCAGATCCAGCCTGAGTATGAAGACAGAGTCACCCTGGTCAATTACCCCTCAGTCCCCAGTGATGCCTCCATAGAGATCACAGAGCTGCACTCCAAGGACTCTGGGACGTACCGCTGTGAGGTCATGCAGGGCATCGAGGACAACTACGACTCAGTGGAGATGCAGGTTCAAGgTATTGTGTTTCACTATCGGGCGATCACCAGCCGCTACACTCTGACCTTTGAGGAGGCCAAGGAGGCCTGCATCCAGAACAGTGCAGTTATAGCCACACCTGAACAGCTGCAGGCTGCTTATGATGACGGCTTCCATCAGTGTGACGCAGGCTGGCTTTCAGACAAAACTGTCAGATACCCCATTCATGAGCCAAGGGAGCCCTGCTATGGAGACAAAGAAACCTACCCAGGTGTACGAACCTATGGAGTCAGGGATGATAATGAGACTTATGATGTGTACTGCTTTGCACAAAAGATGTCAGGCAAAGTCTTCTACTCCATGTCTTATGAGAAGTTTACCTTTTCCGAGGCATCAGACCAGTGTGCAAAGCTCGGAGCACGTTTGGCCACAACAGGGCAGCTGTACTTGGCCTGGAAGGCTGGGATGGATGTATGTAATGCTGGCTGGCTGGCAGACGGGAGTGTGAGATACCCTATCAACATCGCCCGGCCACAGTGTGGTGGGGGTCTCCTTGGTGTAAGGACTGTGTATCTATTCCCCAATCAGACGGGTTTTCCTCTGCCTGACTCACGCTATGATGCCATCTGCTATGAAGGAGAGGATGAAGTACCCAGTCTGCCATTCCCATTGCCCAATGTTTACAGCACCACAGAGCCAGAGTTCAGCGTGGGCACCATCACCCCCAGCCCCGCCGTCTATACTGAGACTGTCACTACTGAGGGGGAGGTGCGGGGTGAGCTGGTTACTCAGGAGCCCTGGAGCACCACCACCATAGAGGCACCCCTACCACTACCTCCCACCATTACAGGAAACATCACtgaggtggtggaggaggtgaTTGGTGTGGCTACAGCTCAGCCTGGTTTCGGCCATGAGCTGCCTGGAGATAATGTCAGCACTGGTTTAGAACCTAAAGGTGTGGTGTTTCACTACCACTCGGGATCCAGGCGCTATGCTTACACTTTTGAGGAGGCTCAGAGGACCTGTCAGCAGATGGGGGCTGAAATAGCCACACCTGAACAGCTGCAAGCAGCATATGAGGCTGGTCTTCATCAGTGCAGTGCTGGGTGGCTGAAAGATCAGTCTGTCAGGTACCCTATTGTTCATCCTCGAAACAATTGCTCTGGAGATCAGGGAGATGTTCCTGGGGTGCGTTCCTATGGGATCAAACCTGCATTTGAACACTATGATGTATATTGCTACATGGATCAAATTAAGGGTGAGGTCTTCCATGTTAGCACCTTGGCAGGCTTCACCTACTATGAAGCAGCTGCCTATTGCCACAGGCAAAATGCCACCATGGCCTCACCTGGAGAGCTGTATGCAGCGTGGAGTCAGGGTTTTCATTCCTGTAGCCCAGGCTGGCTGTCTGATCTCAGTGTCCGTTACCCTGTGCAAGCCTCACAGCACGACTGTGCTATGAATAAATCAGGAGTTCGCACTATTTATATTAACCCTAACCAGACAGGATTTCCCAGCCCAGATTCCAGACATGATGCCTACTGCTTTAGAGCAAATCTGTCTCTGCTAATCAGCGAAGATCTGCTGAACGCTACATGGGAAGGCATCGACCTCAACACTACATATATAACAGAGCTTATAAGGCCTGCTCGCCCTCTTGTCCCTCCTAAGTCTGTGGAGGAGATTGGTTCTGGATCTGCTTCAGGTGACATCAGTTCAGGAGATGTATCGGGCAGTGGAGCCCTCAGTGGAGATGTATCAGGGAGTGGAGAACCCAGTGGAGATGTGTCAGGCAGTGGAGAACCCAGTGAAGATGTATCGGGTAGTGGAGCCCCCAGTGGAGATGTATCAGGCAGTGGAGCCACCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCACCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAATGGAGATGTATCAGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCACCAGTGGAGATGTATCGGGCAGTGGAGCCCACAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCGGGCAGTGGAGCCCCCAGTGGAGATGTATCAGGCAGTGGAGCCCCTAGTGGAGATGTATCAGGCAGTGGAGCCCCTAGTGGAGATGTATCAGGCAGTGGAGCCCCTAGTGGAGATGTATCAGGGAGTGGAGAACCCAGTGGAGATGTATCAGGAACTGGAGTGCCCAGTGAAGATAAATCTGGCAGTGGAGCCTCCAGTGAAGATATGTCTGCCAGTGGGCTGCCAAGTGGAGATGTGTCTGGGCAGAGTGGTGATGGTTCAGGCATCTTTGTGATCTTACAGAAAAGTGGAGATATACTTTCAGCAGAAGGATCTGCCTCAGAGGGCCCTGAGGAGGCTGGAGAGGGGAGCACAATCACTTTTTCCCTGGGATCTGGGGACATCAGTGGTGACCGTTCAGGATCAGGTGACTTGTCTGGATCTGGTCAGGACAGAGATGGTTCTGGTGATCTTTTGTCTGGTTTTGGCAGTGTTGGCAGAGATATGATCACCTTCATTGACTACAACCACATTGACCTGTCCATCCCACACAATAAAACCGAGCAGGAGTTAGGTCGAGGACACCTTGAGGAGAGTGGATTCAGTGGGCTCCACAGTGGTGACATCATGAGTGGGTCTGGATTCATTGGACTTGATAGTGGTGACATCATGAGTGGGTCTGGATTTAGTGGACTCCTCAGTGGTGACATCATGAGTGGGTCTGGATCCAGTGGGCTCCACAGTGGTGACATAATGAGTGGATCTGGATTCAGTGGGCTCCACAGTGGTGACATCATGAGTGGGTCTGGATTCAGTGGACTCGATAGTGTTGACATCATGAGTGGGTCTGGATTCAGTGGGCTTCAAAGTGGTGACATCACAAGTGGCAttgtatttctgaactctgaaatgACTGACCTGACCAGAAGACCTTCAGTGGAGCAGGAGGCGTCTGGAATTTCTGGTGATGTGTCTGGTGATGTCAGTGGCTTCCCCACTGCTTCTGGAACATATAGTTTTCCAAGCCACCCATCTGGTGAGGAACTGAGACCTATTCTAGAGAATGGAATCATTTTGCTGACAGACGATAAGGCCATGGAACTGACTTCCGGAGCTGCTGAGAGTGAACTGCAGGGTCGTCACTCTGTGATGCTTAGTGGAGAAGGCAGTTCTTCTGAATTTCACATGGAGCAGCTCCCCACTGTTCTGCCTACTGAATCTGTATTTGAAGAGGAATTGTATATGAGTGGCAGCATAACTAACACCACCTTTGCAGACACAGAGGAAGATAATGCCACTCATCTATCACATATAAATGCCACCAGTGCGGCAAACATCACAGTAAACTACACCACCCCTCCTGCCCTATCACTCGAGACACCAACCGCAGTGAAAAAGCCCACTGCCTCTGAGGCAGCCCCTGATTTCTGTTCTCCAAACCCCTGTGGTGATGGACTATGTTTTGTGCATGATGGAACCGCTGTCTGCCAATGTCCAGAGGGGTTTACTGGTGAAAACTGTTCAAAAGTGGTACAGGAATGTGGAGAAGGCTGGGTGAAGTTCATGGGCAGCTGCTATATTCACTCAAATGAACGAAAGACATGGACCAGTGCTGAGCAGCACTGTCAGGAGCTAAATGCTCATTTGGTTAGCATCGCCTCCCAGGAGGAGCAATCTTTTATCAACACTCAGGCTCAGGACTACCAGTGGATTGGACTGAGTGACACAGACAAGGAATCTGAGTTCCGCTGGACAGATGGAAGCCCCTTGCAATTTGAAAACTGGAGAACAAACCAGCCAGATGATTACTTTAACTCTGAGGACTGTGTAGTAATGATCTGGCACGAGTTTGGCCAATGGAATGATGTGCCTTGTAACTACCATCTTCCCTTCACATGCAAAAGTGGACCTGtAATCTGCCACACACCTCCTGAGGTAGAGCATACCAGGATATTAGGAGACAAGAAGGAGTACTACCCAGTCAACTCCATCATCCGCTACCAGTGTCACACTGGCTTCACACAGCGCCACTTGTCTGTGATTCGCTGTTTGCCAGATGGCCAGTGGGAAAAGCCTAAAGTGGAGTGTGTAGGAAGCAATGCAAACATCAGACTACGGAAAAGATCGCTCAAGCAGCATTCAAAATCAGCAAAGAGTCGAACATGGAGGAAGGCCCATTAAACAGGACTCAAGACCTGCACATCAAATCATCTAGAGGACTGTTGTTAGTAAAGAGCATCTCAACATAAATCTTAAGCGCCCAGAAGAGAACCTGTAGCCTCAGTAAGAGGGCCAACCTTGTATAATGACGCACATTAGATTCTGTTCTGTAGTCCGCCTGGCTTATTGGTTTCCGAGTGTTACTTAGTGCCTTGCTGttggggagaaagaaagaaccaAGAATATTGAGTGAAATTTTGTTTGTGATGATTTTTTACCTGTTATGGAGATCCTCCCTGTTAATAATTGGTAATATATATTGTGAGAATTACTAAAAAAGTATGTCAGCTTTTTAGATTCCCTAAACTCAAAATCATGCTCTGTCCTCTTCAGCagcttattttattataataagtgtctgattagacactgagTCTTGCCTTATAAGggcaaacacagaaaaaaaaattgaatgatATGAACTACACCCCAAATCCATGAGCCGCTCATTTTCATTTACAGACTGAATATTttctaaaaatgaaaatgagccAAGACTCTGGACATTCCCACCACTAAAACACATTGTATGTGAAAATATTCTTCTTCCAGGCCACCAGGTGACACTGTTGGACACATTTAGAGttttgttaatctacacagccACATGTTTCCACTTAATCCCTGTAATTTAGTCACTTTACTGTTTGGTAACAGTTGTTTCCTCCTTTTTTGTAGGTTTAAGtgtgagagaaaatgagaaagcgTGTGTgaaaagagtgagtgagtgttagGGTGGTTCTTGGCCTAAGAGTGACACTTGAATGTTTATAACAAGACAAAAGGCTTCAGTGACTACAGCTGAATACAATGAAGTCAAGTATATTAGGATTTCAAGTTAAATTTGTGGGATACAGATCTGCTTTACTTTTTGTTGTCCCTTCTGTTTAATTCTGTAATATGTGCAGCATGACTACAGACTGCAGGTTATCTTTGTGAGACTGTGAAAGATAATATACCCACCCGTTTCATTTGCATTTTATAGAACTGCATTAAAACCCTGCGTACGCTACCActataataaacagtattttaaaactA

Function

GO: NA

KEGG:

id description
K06792 AGC1, CSPG1; aggrecan 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684133.1 True 6255 mRNA 0.49 20 40076837 40097960

Neighbor

gene id symbol gene type direction distance location
LOC103047731 abhd2,abhd2b,LOC108418794,LOC107753686,LOC107665722 coding downstream 42747 40022537 ~ 40034090 (-)
LOC103022288 ckmt1,LOC103022288,LOC108418758,LOC107753597,LOC107661454,LOC107554962,LOC107696262 coding downstream 68243 39995508 ~ 40008594 (-)
pdia3 pdia3,LOC107696263,LOC107716732,LOC107753598,LOC107573964,LOC107661453 coding downstream 88476 39982794 ~ 39988361 (-)
LOC103024064 LOC108416404 coding downstream 145158 39928564 ~ 39931679 (-)
LOC111195796 NA coding downstream 150192 39923198 ~ 39926645 (-)
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding upstream 67540 40165500 ~ 40220734 (-)
cartpt cartpt,LOC107679585,LOC107574592,LOC107666283 coding upstream 130879 40228839 ~ 40230309 (-)
c24h15orf40 NA coding upstream 148646 40246606 ~ 40249542 (-)
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding upstream 204199 40302159 ~ 40307383 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding upstream 210534 40308494 ~ 40312741 (-)
G210934 NA non-coding downstream 2069 40072385 ~ 40074768 (-)
G210868 NA non-coding downstream 21619 40054723 ~ 40055218 (-)
G210873 NA non-coding downstream 40737 40035563 ~ 40036100 (-)
G210800 NA non-coding downstream 256934 39816624 ~ 39819903 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding downstream 263273 39813339 ~ 39813564 (-)
G210937 NA non-coding upstream 8644 40106604 ~ 40108923 (-)
G210949 NA non-coding upstream 39916 40137876 ~ 40138308 (-)
G210959 NA non-coding upstream 65373 40163333 ~ 40163550 (-)
G210994 NA non-coding upstream 273569 40371529 ~ 40372033 (-)
G211001 NA non-coding upstream 354282 40452242 ~ 40452572 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 136782 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 280894 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 444661 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 536021 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2872452 37165034 ~ 37204385 (-)
G210991 LOC103042126,LOC108416825 other upstream 263298 40361258 ~ 40363237 (-)
G210995 NA other upstream 274845 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 460724 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 1061270 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 1208986 41306946 ~ 41310751 (-)

Expression


Co-expression Network