LOC111195796


Basic Information

Item Value
gene id LOC111195796
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39923198 ~ 39926645 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684135.1
TTTGGTTGTTAATGAAGATATCCTACTGGTTGTTTTAATTGATCTATTTTCATAATTAATGTACACTGATAGATTTGCTGGGAGCTGCGTGGTCAGCGTTTGGTCTAAGTTAATCATTTCCCAGCCCCTTTATGTCACACCAGTCTGTAGATAGGTTTAATACTGCCCCACACATCATTGAACCAAAccagggctgtgtgtgtgtttgtgtgtgatgtgaTTCTAAGAGATGAATGCTTTAATCCTCCTCATCCTGCTCATTTTGGCACATCAGAGTGGGAGTCAGGATACTGCAGAAGATGAGCATCGTAAAGGTCAGCGCTTCTTACAGTGGGCAGATCACTATGACTTTGCCCTTAAGTTGTCTGGCACAGAGTCACAGTGCTACTGGCACTTCGCTCGACAGGATGGACGCTTTTACCTGACTTACATGGTTCTGTGGGTGTCTGGGATGATTGCAGACCAACACGTAGCTGTGTCCCTTTTCTCTCCTAAGGGCACCCTTATGACCTTCACTGATGATACTAAGGGCCAGATGAACTTCCAAGTCAAGGAGACAGGCTTTTATCAGATGTGCTTTGCCAACTATCACAACCGTTTTGGTGAAATGCGACTCTTTCTAAACTTTGGGGTGTACTATGAGGAGGATGCTGAGGTCCTGAGGGAGAATGAAATGGAAGAAAAGATTCTAAACAGCACTCTGTCCAACATAAAGGGCATTTCCAACAAGCTACGACTTCGAATCCAGCACATGTGGCGCTTCTATAACGTGGCACGAATGCGAAGAGGGGCTGACTACTACCTGCTTCAGTCCAAGTCCAACTACGTCTACACCTGGTCCATTCTTCAAAGCATAGTGATCGTCATGTCCGGATACCTCCAGCTCTTCATCCTCAAGAGGTTGTTTCGGACAGACAGTGACCGGCCTCGCTGctgagacagaaaaaaacaccccccacttacacacacacacacaccacaccatacCACAGCGTATTGCTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684135.1 True 1005 mRNA 0.46 4 39923198 39926645

Neighbor

gene id symbol gene type direction distance location
mlkl NA coding downstream 1364 39911444 ~ 39921834 (-)
LOC103024376 NA coding downstream 15407 39889497 ~ 39907791 (-)
LOC103024693 LOC103024693,LOC108418564 coding downstream 36361 39882684 ~ 39886837 (-)
LOC103025209 adam19,LOC103025209 coding downstream 43745 39844601 ~ 39879453 (-)
LOC103030807 NA coding downstream 80623 39836297 ~ 39842575 (-)
LOC103024064 LOC108416404 coding upstream 1919 39928564 ~ 39931679 (-)
pdia3 pdia3,LOC107696263,LOC107716732,LOC107753598,LOC107573964,LOC107661453 coding upstream 56149 39982794 ~ 39988361 (-)
LOC103022288 ckmt1,LOC103022288,LOC108418758,LOC107753597,LOC107661454,LOC107554962,LOC107696262 coding upstream 68863 39995508 ~ 40008594 (-)
LOC103047731 abhd2,abhd2b,LOC108418794,LOC107753686,LOC107665722 coding upstream 95892 40022537 ~ 40034090 (-)
LOC103029855 NA coding upstream 150192 40076837 ~ 40097960 (-)
G210800 NA non-coding downstream 103295 39816624 ~ 39819903 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding downstream 109634 39813339 ~ 39813564 (-)
G210772 LOC108418277,LOC108268893 non-coding downstream 418792 39503698 ~ 39504406 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding downstream 422265 39463107 ~ 39500933 (-)
G210873 NA non-coding upstream 108918 40035563 ~ 40036100 (-)
G210868 NA non-coding upstream 128078 40054723 ~ 40055218 (-)
G210934 NA non-coding upstream 145740 40072385 ~ 40074768 (-)
G210937 NA non-coding upstream 179959 40106604 ~ 40108923 (-)
G210949 NA non-coding upstream 211231 40137876 ~ 40138308 (-)
atp8a1 atp8a1 other downstream 127255 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 291022 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 382382 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2718813 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 3112702 36809307 ~ 36810496 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 6471 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 434613 40361258 ~ 40363237 (-)
G210995 NA other upstream 446160 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 632039 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 1232585 41159230 ~ 41219443 (-)

Expression


Co-expression Network