LOC103031733 (chst8,LOC108416858)


Basic Information

Item Value
gene id LOC103031733
gene name chst8,LOC108416858
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40795537 ~ 40870630 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684144.1
GTGGGAATCGGTTCTTGAACGCGACCGGTACAAAGAGTCGATTCATTCGCGAGTCGGACATCATTTCAACTTCACAACTCGGCGCTCGGAGCAGAAGAGCCGCCTCAGGAGCTTCACACACGACACGGAGCTGAACAGACGGTGAAGTTTGATACGGGGAGTCGGAGAACGGCGTCCACTCAGACTGTTTCTGTTCGGACGCggctgaaatgtgtttattttgagcCATGCTCGAGTTTGGGACTCGCTTTCGCCTGACTGAAACATATTTGGCGACTCGTTGAATTGACTTGAAGAAAAGTGGGACTCGCAGGTAGACACGCGGACTTTCTCACAGCCTTATGAAGACAGCAGAGGTCCCAGGCTCCTGGCCTTGGTCTGCAGGCCATGCTGTGGCAGGACTGTAAGGGTGTGGAGGCTGGCTGTGGGGGCAAAAGGCGTTTGCGTTCAACTGTCATCGCCATGAGGCTGCCATGCTCCTTTTGgttcctgctgctgttcagcACTGGAGgcctgctgctcctgctgcatCTACAGGACCTTACAGAGACCATTCAGCAAGGCCCAGGTGCAAAGCTGATATTTCCCCACGGGCAGCTTGTGAGTAAGGATCAGTGCCCTCATTGTGCAGATGCTGAAATTCAGGCTTCCATCCAGCCAGCAAAGCTCTTCCTCCAAGCCCCCCGGTCTTCTCTCCTCAACCCCAGAGACATCACAGCGCAGGTCACAAAGAACCACCGCAAGCTCCTCCTGAAGAGCTCCTCTCCTCTACTGCAGCTCAGCAGCACCCCTGCTGGCCGAGCCAAGAACAGCATCAGTAGACTGACCAGGGTCCAGCGGTCCCGTAGGAAACTGATGAGAGAGGTTTGTGCCAAATACAGGAGCAGCAACATCGCACGGGCCGTGACCCGCCAGCACGTGTCCCGCATCTACGTGGAGGACACGCACAAGCTCCTGTACTGTGAGGTCCCCAAAGCAGGCTGTTCCAACTGGAAGCGCGTGCTGATGGTTCTGCAGGGTCAGGCAGCCTCAACCGGGGAGATTCAGCACGAGCAGGTCCACTACGGGAACCACCTGAAGAGACTGGACTCCTTCAATCATCAGGGCATCGCCCGTCGTCTGGAGACCTACACCAAAGTGCTCTTCTTGAGGGAACCCTTCGAGAGGCTTGTGTCTGCGTTTCGGGACAAGTTTGAGAGTCCAAATTCGTACTACCACCCGGTCTTCGGAAAGCCCATCATCTCCAGATATCGCAGCAACGCTTCACAGACTGCCTTACGCACAGGGGAGGGAGTGACCTTCAAGGAGTTCATCCAGTACCTGCTAGACGTTCACCGGCCAGTGGGCATGGACATCCACTGGGAACCGGTAGTGCAGCTGTGCAGTCCCTGCCTGATAGACTACGACTTCATAGGCAAGTTTGAGACGATAGAAGAAGAAGCCAATTTTCTCTTGAGGCGAATTGGAGCCCCAGCAAACCTCACGTTCCCCAGTTTTAAAGACAGGAACCCAAACGCAGCGAGAACTTCCTCACGAATCACACAGGAGTATTTTGCAGGGCTGAACTTGACAGAGAGGCAGAGAACTTATGACTTTTTCTTCATGGATTATCTAATGTTCAACTATTCCAAGCCGTTTGAAGATTTGTACTGAGAACACTGGAGTGAGGAGTTTGTGaatgtactgtataaatatatatatatatatatatatactgacagCTGTTCCCTTTACTGTTGGTCTGATGttggtgttttgttttgttttaagtcAATCAACTCATTACTTTGTGAAAGTGTgtttaaataacttattttatatttatatttaaaagacTTTATTTACAACTTAGTAGTAATTCTTGTATACAATGGCAGGCTGGTTCTTGCACATTCATTACAATGTTCACAGAGCAGAAATGTTCTTCAGGATCAA

Function

symbol description
chst8 Human ortholog(s) of this gene implicated in peeling skin syndrome. Orthologous to human CHST8 (carbohydrate sulfotransferase 8).

NR:

description
PREDICTED: carbohydrate sulfotransferase 8-like

GO: NA

KEGG:

id description
K09672 CHST8; carbohydrate 4-sulfotransferase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684144.1 True 1935 mRNA 0.51 4 40795537 40870630

Neighbor

gene id symbol gene type direction distance location
LOC103032053 kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706 coding downstream 7946 40767053 ~ 40787591 (-)
dnajb9 dnajb9,dnajb9a,LOC108419513,LOC107576388,LOC107716654,LOC107678282 coding downstream 85283 40705129 ~ 40710254 (-)
dnm1l dnm1l,LOC107716704 coding downstream 91206 40687792 ~ 40704331 (-)
LOC103027945 NA coding downstream 205069 40584365 ~ 40590468 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding downstream 212584 40570582 ~ 40582953 (-)
adal adal,LOC107753575 coding upstream 20901 40891531 ~ 40896561 (-)
LOC103033419 cplx3,LOC103033419,LOC107753702,LOC107576377,LOC107678284,LOC107661513,LOC107554944 coding upstream 26262 40896892 ~ 40902164 (-)
LOC103033740 csk,LOC108419600,LOC106562350 coding upstream 42453 40913083 ~ 40945688 (-)
edc3 edc3,LOC107678287,LOC107716710,LOC107661473,LOC107753578 coding upstream 80388 40951018 ~ 40959531 (-)
LOC103021433 LOC108419726 coding upstream 113020 40983650 ~ 41152030 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 69353 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 77335 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 78424 40629372 ~ 40717113 (-)
LOC111195798 NA non-coding downstream 143491 40651665 ~ 40652046 (-)
G211085 NA non-coding downstream 183817 40611097 ~ 40611720 (-)
G211242 NA non-coding upstream 20184 40890814 ~ 40911636 (-)
G211450 NA non-coding upstream 983168 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 996130 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 1210090 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 1311746 42182376 ~ 42182687 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 225389 40558684 ~ 40570148 (-)
G210995 NA other downstream 417184 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 432300 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 855482 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 999594 39643544 ~ 39795943 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 288600 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 436316 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 722701 41593331 ~ 41600623 (-)
G211539 NA other upstream 1334506 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 1411127 42281757 ~ 42361599 (-)

Expression


Co-expression Network