LOC111195800


Basic Information

Item Value
gene id LOC111195800
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41601106 ~ 41606198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684173.1
atACTCTGCTGGAAATAACCTGCGTATTTTATCAAGACCTTCTGCCATGTTCTGCTGCAGAGTGTTTACTGAGAGTGTTTACTGAAGAGTGGAGGGATGGGTGTGGCAGACTACAGGGAACTATAGGATGTGGTTGTAGTCATCTAACATTAATGCTGGACGTAAGAGGCTGGAGCTGACTATAAGGTTACTGCAGCAGTGGGATTATAGAGCAGGACAGCGGTGGTTTGGAGGCTGTACAGAGTCAGTTATGCAGGGTATGAGTTTGTATTGTTCTCACTGTAAGACTTGCTCTTAGCTGGATATGGGTAGTGCAGCCTCAGTGAAAAGCAGTACAGGAGACACCAGCACACTTCACTGGGAGTTTCTTCAGAGCAATAAAGTTAGACCCACAGCCCCCACACTGACTCAAGATGTGATTGGGGTCGACATCCAGGGGAAAGGAACTCTCAGGATCTGCATGTTTGAGGACAGAATCAATATCTGCAAGTACTATGACGCTCGGACAGGCCTGTGGCTCCCGATGCCTCTTAACTGGGAGATGAAAATTGATTTTGTTCGCCACAGAATCCAACAAGTCATAAAAGCTCTCCCAGGCCTGGTGGATCAGAAAGAGATCGCTGCAGCTCTCAGACAGTGTAACTATGACCCTGATGAGGTCATCTCCATCTACCTCACCATATTCGGAGACATCCTCTCTGAGCCACATAAACCAACACACTCTTATCCTGATTCAAACTCATTCAGAACTCATTCTGAAAAGGAGAGGGTCATTGAAGAGCTCCAGAAGAAGCTCCAGTCTAAAGAAAAGGAGGCTGAGGATGTCCTGCAGAAAAACAGCTCTCTGTCTCAGGAGTCTCAGCATTTATCTGATGTGGTGCAGAATCTGACCAGCAGAGTGGTCAAGCTGGAGGCAGATAAGCGTGTTGCCAAGGAGAAGCTTCGATCTCTTCTGAGCCATCCCATTGACCCTAATGCCAAAGCTAACCTCACAGTTTCAGTGAATCCTCAGCACCTTCAGCAGGTCAGAGGTTTAACTCAAGGTCTGAGACTCTCCAGTAAAAAGCTGCGCTCCATGGTGTACGACACACTCGCTGACATGCAGAAGCAGCTACAGCAGTTCAGAGCTGAGACTCAGCTTATGATTCAGAGACACCAACAAGAACACAGAGCTGTGCAGGAGCTTCAAGCCCTCTACCAAGGAAGCCTCCGAGAGGAGGGCACTGCATAACAAGCTTCTGGAGCTGCAGGGGAAGATCCGTGTGTTCTGCCGCTGTGGACGGCAGTCAGACTCAGCAGGATCCACAGGCTGCCTGGAGGTCCCTTTGGACCAGGAGCTACTGCTGCTCCAGAAGGGAGGCAAGAGGAAGTTCATCTTTGACAAAGTATTTTCCTCAAATGCTTCTCAGGCAAGAAAACCCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684173.1 True 1425 mRNA 0.49 7 41601106 41606198

Neighbor

gene id symbol gene type direction distance location
dock4 dock4,si:dkey-81e3.1,LOC108268692,LOC107554957,LOC107661459 coding downstream 22592 41473353 ~ 41578514 (-)
immp2l immp2l,LOC107716721,LOC107574088,LOC107696251,LOC107753590,LOC106573249 coding downstream 129157 41324957 ~ 41471949 (-)
LOC103038802 NA coding downstream 347515 41235100 ~ 41253591 (-)
LOC103036594 LOC103036594,LOC108419838,LOC107753583,LOC107554952,LOC107661466,LOC108268783,LOC107574131,LOC107716716 coding downstream 377281 41204105 ~ 41223825 (-)
LOC103036286 fbxl14,fbxl14a,fbxl14b,LOC107554951,LOC107661467,LOC107574141 coding downstream 398488 41200075 ~ 41202618 (-)
tmem168 tmem168 coding upstream 1879 41608077 ~ 41615191 (-)
bmt2 bmt2,zgc:153606,LOC107716726,LOC107696259,LOC107753593 coding upstream 10355 41616553 ~ 41625200 (-)
LOC103022995 NA coding upstream 21625 41627823 ~ 41633902 (-)
LOC103043124 LOC108420127 coding upstream 31137 41637335 ~ 41652545 (-)
LOC103042404 cacna2d4,LOC108268693,LOC107574657,LOC107679611 coding upstream 47501 41653699 ~ 41694976 (-)
G211242 NA non-coding downstream 689470 40890814 ~ 40911636 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 874922 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 882904 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 883993 40629372 ~ 40717113 (-)
G211450 NA non-coding upstream 247600 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 260562 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 474522 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 576178 42182376 ~ 42182687 (-)
G211532 NA non-coding upstream 587116 42193314 ~ 42195273 (-)
LOC103022682 NA other downstream 483 41593331 ~ 41600623 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other downstream 290355 41306946 ~ 41310751 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other downstream 381663 41159230 ~ 41219443 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 1030958 40558684 ~ 40570148 (-)
G210995 NA other downstream 1222753 40372805 ~ 40378353 (-)
G211539 NA other upstream 598938 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 675559 42281757 ~ 42361599 (-)
G211691 mrpl11 other upstream 1157003 42763201 ~ 42847764 (-)
G211912 cfl1,LOC107658066,LOC107601108,LOC107661397,LOC107560979 other upstream 1397207 43003405 ~ 43025465 (-)
LOC103021577 ubl3b,LOC108432919,LOC107658069,LOC108231135,LOC107707244,LOC106515624,LOC107092570,LOC105912149,LOC101472018 other upstream 1482824 43089022 ~ 43107011 (-)

Expression


Co-expression Network