LOC111195834


Basic Information

Item Value
gene id LOC111195834
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26096805 ~ 26099827 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684340.1
agagagagagagagagcaaatcaAACTTGCTCCAGAACTTAAAGAGCGACAGCCAAAGCTTCAGAATGTCTGCGGAGAAGATGCGCTGGATGGGTTTGACCCTGGGGCTGGTCCTGCTGATTGCAGTCTCCTCAGATGCAGCACcttTAGCTATACAACAGCCTGAGGAGTGCTGCTTCACCTTTGTCAGTTTTACAATCCCCAAACATGCCGTCGAAGAAATAAAAAGACTTTCGGTCCACTGCCCCAAACCAGGCTACATAGTTACAACTCCTAAAGGAAGGATGTGTCAGAAGACTCTCGACATCTCTAAAGACTGAAAAACTCAGCTTCAGCACGAGACGGATGCAGCACACTCTACATAATACTTTACTCATCGCGTGCTTTCAGTATAATCAGAGCTTAATTACTGTCCTGTAATAAGATCAAACAGTGCATGACTTAAAATAACTGCAAATAAACGACTGATACGTCACAGTACTATATGGATATTATATAAGAGAGAGCTTTTATCATCAGCACATGTaccagtgttaaataaacactgtaattGATGCTGTATACTGTGTGTATTCACTGTGGTAAAGAAGTCATTGTCACGTTTATGAACTCTGCCGAAGATGCTTTTGCTTTGTGCTTTAGTACATCATCATTTCAATGTACTGCTCtagatttaaataaaacaatgcatgatttaaaaagca

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684340.1 True 704 mRNA 0.41 3 26096805 26099827

Neighbor

gene id symbol gene type direction distance location
LOC111195867 NA coding downstream 1614 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 411194 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 524534 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 644714 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 819045 25270141 ~ 25277760 (-)
LOC111195836 NA coding upstream 144421 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 514035 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 573779 26673606 ~ 26715253 (-)
kitlg NA coding upstream 692935 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 846467 26946294 ~ 26949370 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 20159 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 81802 26014747 ~ 26015003 (-)
G208008 NA non-coding downstream 83189 26007220 ~ 26013616 (-)
G207965 NA non-coding downstream 179245 25903907 ~ 25917560 (-)
G207964 NA non-coding downstream 202328 25893140 ~ 25894477 (-)
G208026 uba2,LOC107701803 non-coding upstream 21650 26121477 ~ 26122367 (-)
G208027 uba2 non-coding upstream 23520 26123347 ~ 26124768 (-)
G208030 NA non-coding upstream 27280 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding upstream 34759 26134586 ~ 26155268 (-)
G208042 NA non-coding upstream 64088 26163915 ~ 26169806 (-)
LOC111195761 NA other downstream 8390 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 10301 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 104311 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 158773 25919220 ~ 25938032 (-)
G207940 NA other downstream 363501 25592631 ~ 25733304 (-)
LOC111195835 NA other upstream 3660 26103487 ~ 26117632 (-)
G208046 NA other upstream 112231 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 555616 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2116568 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2562356 28662183 ~ 28695700 (-)

Expression


Co-expression Network