LOC111195836


Basic Information

Item Value
gene id LOC111195836
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26244248 ~ 26246421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684343.1
ctcccgtttatggtatggtttcccCGCTCATTGTTTCTCTGGTATTGACCTGGCTTGTTTTGACTACCCCTGCtgaatcttttaataaaagatttTTATCGTATCTGCACAAGTCTCCTccttgtctggccctgacattgtcatttggcgacacttagaggcgatgcattgaaattacaactaagATTTCCTTTACGCACAGATTGTAATAAgtcattattgggtaaaataaagtgaattaatcagacaattaaacagtaattaaccagacaatttcattggcttactgAAATAATCATTCAACGTGTTTCTGcttagcctagattatataaacatgcatgAAATGTTGCgttggagttgttggagatggcagcgttggcattattggaaGATATTACTAATGGCCGAATTCGTCGAGAGCgcattttccgtgaccattatgattttttggcccatgatgatgactggcttatgAGCCGTTTCAGATTTCCAAGAGCTATCCTCTTGGAACTCTGTGCTGAGTTGGGTCCCGTTTTGGAGAGAGAAACGGCGAGGAGTCGTGCATTGCCAGTTCCTTTACAGATACTGACAACGCTTGGCTTCCTGGCAACTGGCTCGTTCCAAAGAGAACTGGCAGACCGGTCGGGGATGTCCCAGTCATCTTTGAGCCGTGCCATGCCAGCTGTTTTGGATGGGATCATCTGCATGTCAGCTAGGTATATAAGGTTCCCATATGATGTGGTTGACCAGGCAAACATCAAAGCGCAATTTGCAGCGATAGCCGGTTTTCCTAACGTAATCGGAGCGATCGACTGCACACACATTGCTATAAAGGCACCATCTGAGGAAGAATTTTCTTATGTGAATAGAAAGCACTTTCATTCCATAAACGTGCAAATTATCTGTGATGCAAAAATGTGCCTTACTAATGTAGTGGCACGGTGGCCTGGATCAACACATGATTCGTACATCCTAACAAACAGCATGGTTGGGATAAGATTACAAGCTGGCAGAGTGCGTGATGGgtggcttcttgGAGACAGCGGCTACGCGCTCAAGACGTGGCTGATGACCCCCCTTTGCAATCCGCAGACTGACCGGGAGCGGAGATATAAACTGGCGTGGACTGTGTGCCAATGGATGCTGTAGAAATACATAAAAGAATTAAATACATCTCATTAACCCAAACAAGCTATGTCTGTCTTTCTTATAAATAGTAGGGGGTAAATTGCCATAATCAACCAACGTAGCCTACTAACGGGCAGCtattaaaaaaggaataaaataaaaaaaggcaaatagTGTACTTGGAAAATTGCTCAAAGAACTTGAACTCTTACCTTCaccggtatccagggtaacatcAGTGTCTCCCTCACCTGCTGACACCACGCCAGAGAGGGCCACGTCGCCCACAACAGCCACCACCCTTTGCTCAAATGGTGTGAGCTCCTCCACCCCCGGTCCGCTCCCCATCCTCGCAACACTTTCTCGATGGGCAGAAGACCGTTTCTTAACGCCCGACTTAACATCATACCATTTCTATTTAGTTCAGCTACTGTGCGGTGTTCAGAGCCCACTGCATTGACGGCCTGCGCCACACTTTCCCATTCAATCCTTTTACGTTTACTGTTTATGCCGGAGGACAGAGaaccaaataaaatgttttttttttggcctctACCTCTGACTGTAAAACCTCCAGTTCACAATCGGTAACATTCCTTTTCTTTGCCATTTTCGAAATGAGTATTCCAAAGCCTGTTTTCTCTCATTAGCCTATTATACTCTGCTTAATTGAGGGAGGAGACATGACAGGTGTGATGCGCTCGTGCACGtgcgcttgatttcaagttgattgtgatgtactaagagaaaatACGTGGAATTCTGCCTACGTTTGataaatccagatttttttgtgcgtacggaacttttcaggtctgagcgtacggaacattttagtaggaagtccacgcaagtcttagtacatgaggccccaggtcTGCTTTGTCCAGTGTTACGGATGACAGGGATAGACGTTAatgcagaatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684343.1 True 2079 mRNA 0.44 2 26244248 26246421

Neighbor

gene id symbol gene type direction distance location
LOC111195834 NA coding downstream 144421 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 149057 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 558637 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 671977 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 792157 25412186 ~ 25452091 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 367441 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 427185 26673606 ~ 26715253 (-)
kitlg NA coding upstream 546341 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 699873 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 705268 26951689 ~ 26953473 (-)
G208048 NA non-coding downstream 28519 26215453 ~ 26215729 (-)
G208047 NA non-coding downstream 29138 26214899 ~ 26215110 (-)
G208042 NA non-coding downstream 74442 26163915 ~ 26169806 (-)
G208030 NA non-coding downstream 87202 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding downstream 88980 26134586 ~ 26155268 (-)
G208070 NA non-coding upstream 34026 26280447 ~ 26281036 (-)
G208307 NA non-coding upstream 115665 26362086 ~ 26362363 (-)
G208329 NA non-coding upstream 171300 26417721 ~ 26418448 (-)
G208344 NA non-coding upstream 224802 26471223 ~ 26471582 (-)
G208356 pigy non-coding upstream 262829 26509250 ~ 26514290 (-)
G208046 NA other downstream 31407 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 126616 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 155833 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 157744 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 251754 25989438 ~ 25992494 (-)
G208394 borcs5,LOC107753635 other upstream 409022 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1969974 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2415762 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2536662 28783083 ~ 28860774 (-)
G209090 NA other upstream 3777540 30023961 ~ 30024550 (-)

Expression


Co-expression Network