LOC111195843


Basic Information

Item Value
gene id LOC111195843
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 33853069 ~ 33854406 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684346.1
CAGGAGCGAGAAACGTCCACACGTGTTAATGGACGGACATGGGGACGCTCCTGCACTGAAACAGGCCAGGCATCAGCTGGAGAGAGATACTGTCGTTAGCACCAGCAGAACTTCTGGTAAGAGGAAGCTGGCGGAGACAGCAGAGGATGAAGCTCCAGTATTGAAAAAGGCTCGAATCCAGCTGGAGAGAGCTCCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGCCGTGGGGAGGAGATAGCGAGGAGCTCACTGGGAGGCGACTTGGGCATGCAGGCCGAGATCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGTCGCGTCCCGTTCTTCAACAAATCTCTTGAAGGAAGAGCGGCTCCGGACGTGCTGATCATCCACTGTGGCGGGAACGACATTGGAGGGATGAACGCCGGTCAACTCAGCGCAGAGATGAAGGCGGATCTGCATGATCTCCACCGTCGTTTTCCACACATGAAGATCATGCTGTCGGATATCACCCCACGACGTCAGTGGAGGTCCACCACTCATCCCAAGAGGATTGACGAAGCCCGGAAATGGCTAAACAGCGAGATGGCCGATTTCATCTTGGGAGTGGAGGGCGGTGTTATTCATCACCCAGATATCATGTTCCACAACCCTCGACTCTTCCTCAGAGACCGGGTTCACCTGTCTCCCTTGGGCAAagaactgtttttaaatgacattGCAGAATCCCTGAAAACCTTCATATAATAAAGGTGATTCTGCTGAAATCATCTGGATTCATCTGGATTAATTCAACACTGAGAAACACCAAGAGACTGTGGACTTTACAGTGCAGTGAAATCAACAACTCAGTATTAGAtgctaataaatgttttattttctataacattcaaaatctgtaaacttaaaaatagtctattttttcagtaactttttttttgtttgtttttgtactaGAGATTGGGTAGATAACACAGTTCACAGTAGACTTCATCAGCCTAAACATTTCAaagaattaattaaaaacaattccCAATTCCTTAATTAAACTTATAagtaagcttaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684346.1 True 1070 mRNA 0.46 3 33853069 33854406

Neighbor

gene id symbol gene type direction distance location
mrpl18 mrpl18 coding downstream 8118 33840987 ~ 33844951 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding downstream 40747 33800102 ~ 33812322 (-)
LOC111195776 NA coding downstream 1226493 32614920 ~ 32626576 (-)
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding downstream 1243161 32602209 ~ 32609908 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 1252058 32592697 ~ 32601011 (-)
pdgfc pdgfc coding upstream 54703 33909109 ~ 34001611 (-)
fam198b fam198b coding upstream 357159 34211565 ~ 34220540 (-)
tmem144 NA coding upstream 367473 34221879 ~ 34229881 (-)
LOC103036564 LOC103036564,LOC108425002 coding upstream 805084 34659490 ~ 34674207 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding upstream 821720 34676126 ~ 34708056 (-)
G209575 NA non-coding downstream 14243 33835298 ~ 33838826 (-)
G209576 NA non-coding downstream 18393 33831220 ~ 33834676 (-)
G209571 NA non-coding downstream 53864 33797302 ~ 33799205 (-)
G209579 NA non-coding downstream 71062 33781743 ~ 33782007 (-)
G209546 NA non-coding downstream 103553 33749177 ~ 33749516 (-)
LOC111195844 NA non-coding upstream 216708 34071114 ~ 34073594 (-)
G209623 gria2,gria2b non-coding upstream 269956 34124362 ~ 34127776 (-)
G209625 NA non-coding upstream 281806 34136212 ~ 34151668 (-)
G209628 NA non-coding upstream 313768 34168174 ~ 34168411 (-)
LOC111195783 NA non-coding upstream 316350 34170756 ~ 34188629 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 248080 33602099 ~ 33604989 (-)
G209458 NA other downstream 896984 32955615 ~ 32956085 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 1213140 32629294 ~ 32639929 (-)
G209303 NA other downstream 2335177 31517433 ~ 31517892 (-)
G209256 NA other downstream 2578667 31273868 ~ 31274402 (-)
G209640 NA other upstream 316361 34170767 ~ 34212849 (-)
G209660 NA other upstream 380512 34234918 ~ 34274593 (-)
egf NA other upstream 766055 34620461 ~ 34656484 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 855365 34709771 ~ 34759091 (-)
G210059 NA other upstream 2856014 36710420 ~ 36710743 (-)

Expression


Co-expression Network