LOC111195856


Basic Information

Item Value
gene id LOC111195856
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26946294 ~ 26949370 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684352.1
aaaataactctacactttttttaaagatggcAGAAATGGAGGTCAACAATATAAAGATTGTGACAGAGACACTGAGGGGAGCCCAACTTGAGCATCTGCGTTTTTACCATGCAACGTCTTTAATCAAGGACGTAACCCAGGACATCTCAAAAAGTTCAAAAGAAGAATGCATGGCAGAAAAATTTAATGTCTGCACTTTTCAGAGACTAGCAGCGCAAGGCTCACTTTATCCGGCGGTCACCAAATTTCACTGGGTACAGTGTGATAATTGCAAAGGCTGGCTTCACACTGATTGCGCAGGAGTTCAAGATGTCAGAGGACTGAAATTTACATGTGGGTGCAGAAATCCTCGCCCCCTCACCTTTGACAGAATTAGAGCAATCATTCAACAGCATGGTGTATGTGGACTTATTCAAGATGAGGAGATTAAGGTGTTGCATGACTCTCTAAGGTGTGGACAGCAGAGGTCAAGCAGAATGTTTCTCTGGCAGCATCCTGAGACCTCTCCAAGACTCAAAAACCTCTTGAAAACAAAGATGACTCCTTTCACTGATGAAAacACTTCTGCGCTGATTGGGAAATTAAGGAGTGTTTTGCAGCTGGGAAATGATTCGGAAGATCTCGACTTGTTGTTTGATGTCCTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684352.1 True 647 mRNA 0.43 7 26946294 26949370

Neighbor

gene id symbol gene type direction distance location
kitlg NA coding downstream 130835 26792762 ~ 26815459 (-)
cep290 cep290 coding downstream 231041 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 306071 26613862 ~ 26640223 (-)
LOC111195836 NA coding downstream 699873 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 846467 26096805 ~ 26099827 (-)
LOC111195857 NA coding upstream 2319 26951689 ~ 26953473 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 77124 27026494 ~ 27233590 (-)
LOC111195765 NA coding upstream 158929 27108299 ~ 27111038 (-)
LOC111195771 NA coding upstream 196666 27146036 ~ 27152300 (-)
tmem231 tmem231 coding upstream 1207397 28156767 ~ 28163353 (-)
G208455 NA non-coding downstream 52244 26885476 ~ 26894050 (-)
G208448 NA non-coding downstream 54037 26883504 ~ 26892257 (-)
G208429 NA non-coding downstream 55130 26889524 ~ 26891164 (-)
G208446 NA non-coding downstream 64833 26861641 ~ 26881461 (-)
G208438 NA non-coding downstream 74834 26840289 ~ 26871460 (-)
LOC111195769 NA non-coding upstream 1544 26950914 ~ 26951324 (-)
LOC111195768 NA non-coding upstream 5397 26954767 ~ 26956450 (-)
G208481 NA non-coding upstream 42123 26991493 ~ 26991928 (-)
G208487 NA non-coding upstream 58797 27008167 ~ 27011112 (-)
G208518 NA non-coding upstream 215806 27165176 ~ 27181579 (-)
G208394 borcs5,LOC107753635 other downstream 290110 26655443 ~ 26656184 (-)
G208046 NA other downstream 733453 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 828662 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 857879 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 859790 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1267025 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1712813 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1833713 28783083 ~ 28860774 (-)
G209090 NA other upstream 3074591 30023961 ~ 30024550 (-)
G209127 NA other upstream 3213087 30162457 ~ 30162973 (-)

Expression


Co-expression Network