LOC111195857


Basic Information

Item Value
gene id LOC111195857
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26951689 ~ 26953473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684353.1
tataaagatagatTATTTTTTCTACTTGAGAATCTGCAGCTGTTATGCATGTTCCTAACATTATTGTTTCCTCTTCATATATTAGGGTCAAATTTAAAGAACCCTTACTCAAGTGAGCTGACCTACTCAGCATTTGCTCCCTGGATAGGAAAAGAGAGCAGAATTGGATCGGTTGTCCCTAAAACGGAAGCTTTGAAAGGGTTTTCCAAACGCCTGGAAGATTCTGCAGGCAAAACTACTTCTGCAGTCAAAACTGCATCAGCAGAAGACCGCCTGTTTGAATCACAAAAGTCTGAGCTAATCAGTCTTTGTGTGGAGCTGGGAGTGTCTTCTGAGGGGTCTGTGTCTGACATCCTTAATCGTTTAGAAGAACTTCTCCTGTACAAGGACATCTATCCCAAGATGTTTATGAAGCTGCAGAGAACGGGAGGTGGAGTCTTACACAGCAGCTGCATGCACTCTGTTGTCTACTACTGCTCTCCATTGTGGTGGCAAGAATCGGCAAGAGACCATACTGATGCCCTATTAAGTTTTAAAATACCACCTACAATATACATCTCAGATATTgctggaagagtggcaagacaTGCCAATAATAGAACAAGACAACAATTTTTTCAGCCATTTGATGGAAGGCTTTGTGAAGCAACtccaaaaaacatttcaaaagcATCCCAAAAGCAACTGAGTGTAACTTTTCCATGGACCACATGCTTAACAACAAAAGCTGGTCCTTCACTGGAAACTAGAGTGCATGGCCCACATCCTATCACAAGAACAGCAGACAAGTTTTCGTTGTATGACAAATTTCatcagaaaaatcagagaaGACCAGAAGAGAAGCTCAGGAGCTTGGACCTAGTGCCTGAAGTAGCTGACATACTGAATTCATCGTTAGCTGAACAACTGAACAAGGAACTTGCTAATTCGAGATATTTTCTTTGCCAGCTTAAAGATGTCCATTACATGTTCATGCTGCGACTTGTTTTTCATCTCCATAACCAGCGAATTAACTTGGCATTCTTGTCCAAAATGCAAAGGCTGGCCCAAGGGAATGCAGACATTGGTGAAGATGGAAGGGTATTGGTGCACGTAAGTAGGCCCAAAAAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684353.1 True 1113 mRNA 0.42 3 26951689 26953473

Neighbor

gene id symbol gene type direction distance location
LOC111195856 NA coding downstream 2319 26946294 ~ 26949370 (-)
kitlg NA coding downstream 136230 26792762 ~ 26815459 (-)
cep290 cep290 coding downstream 236436 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 311466 26613862 ~ 26640223 (-)
LOC111195836 NA coding downstream 705268 26244248 ~ 26246421 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 73021 27026494 ~ 27233590 (-)
LOC111195765 NA coding upstream 154826 27108299 ~ 27111038 (-)
LOC111195771 NA coding upstream 192563 27146036 ~ 27152300 (-)
tmem231 tmem231 coding upstream 1203294 28156767 ~ 28163353 (-)
adat1 NA coding upstream 1223667 28177140 ~ 28193065 (-)
LOC111195769 NA non-coding downstream 365 26950914 ~ 26951324 (-)
G208455 NA non-coding downstream 57639 26885476 ~ 26894050 (-)
G208448 NA non-coding downstream 59432 26883504 ~ 26892257 (-)
G208429 NA non-coding downstream 60525 26889524 ~ 26891164 (-)
G208446 NA non-coding downstream 70228 26861641 ~ 26881461 (-)
LOC111195768 NA non-coding upstream 1294 26954767 ~ 26956450 (-)
G208481 NA non-coding upstream 38020 26991493 ~ 26991928 (-)
G208487 NA non-coding upstream 54694 27008167 ~ 27011112 (-)
G208518 NA non-coding upstream 211703 27165176 ~ 27181579 (-)
G208519 NA non-coding upstream 215305 27168778 ~ 27170164 (-)
G208394 borcs5,LOC107753635 other downstream 295505 26655443 ~ 26656184 (-)
G208046 NA other downstream 738848 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 834057 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 863274 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 865185 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1262922 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1708710 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1829610 28783083 ~ 28860774 (-)
G209090 NA other upstream 3070488 30023961 ~ 30024550 (-)
G209127 NA other upstream 3208984 30162457 ~ 30162973 (-)

Expression


Co-expression Network