nup160 (nup160,LOC107555692,LOC107756876)


Basic Information

Item Value
gene id nup160
gene name nup160,LOC107555692,LOC107756876
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28310866 ~ 28367957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684356.1
ATGGCAAAAAGTTTTAAGGAGCAGCTGTGTGAGCAAATGCGAAACTACCCGCATCAGTACGACCTGTCCTCATCACAGCACAGTGACAAATATGCTATGCAAAATAGCTGCCGGCAGGCGGCACCATCCAGCAGCGCGCGCATAGTTTTCAAATTGCGCCATATCCGGTTTGAAGGCGCGGGTGAGATGGCGGCGCTGGAGCGGAGCTATACGGAGATTCAGGGCTTCCAGAGGGAGAGGGAGGCTTCATTCCGTACTATCAACGTTACTGTCGGTATAAGTGCGCCCCCTGGCGGAGTGAAGCTGCCGGACAGCGCTGGCGGGTTCTCCTATGAGGAAAGCGGGACGCTGCTGTCCATCACCAGCAACAGGTTCATCTACTGGTCTACGTCTGGAGACACAGTCCAGCTGGTGGAACAGTCTCTGGACACTAACCTCCTGAATAATGCGATCAGACTGAAGTTCCTGCACTGCTCAGTTCTACCCAGAGGAGTCCATATACACGAAACCCTCAACAATGTCATCATCCTCATTGTCACCAACCTGTCTGTGCACAGGCTGGTTTTGCCACACCCCACACGCATGTACCACAGCgaGCTGGTCACAGAGCTGCAGATGCAGTCTGTGTTTACAGATGTGGGGAAGCTGAGTGTTCAGGATGAGTCTCACAGTTTCATTCTTCCCCAGAGCCCCACAGCATCTGCTGCTTGGATTAGCCCGAATGGACATGCACACTTCGCCCTCTCCCCACCCACTGGGGGCATCACTGTGGTTACCTTACCACCCCATGACCAGCAGGGGTCTGCTTCTTTGCTAGAGCTGAAGCAGAGTTCAGTAATGCAAAGATTAGCTGGCTGGATGCCTTCAGCAATCAGGGGGGAGCAGAGTCCGTGTGACTTGGCGGTTAGCCTGGCTGCCTCGTCTCTGGAGGACGACACTTTTATCTTCGCTCTGTGTCAAGATCATAAACTGCGAGTGTGGTCATTCAAGgagcagcagtgtgtgctggtGACGGATCTGCTGGACTATGTGCCTGTGGGCCGCAATGAGTTGCGGTTTGTTCCTGGTCAGGCCCACCGGCTGCGTGTGTGTTTCTCTGGCTCTACAGGACTGTGTGTCTCCGTCTACCTTGCCATACCCAATCGGGGCCAATTCTGTGTGCTGCAGCTGGTGGCTAGTGAAAACAGCCGCTACAGCCTGGAGCACATCTCTACCAGCTTCAGTACACAGGAGACGCTGGTGGACTTTATGTTGACTGCCACTGACATTTGGGGTCTCTGGGTGGATGACGATAATCAGGCCGTGGTGAAGTACATTAACTTTGAGCAtaatgCAGGGGGTCTGTGGAACCAGGTGTTTGTCCAGCCGCCTCCAGAGGAGGAAGTCAATATCGGTCCAGAGCAGGACCCCAGGGAGACGTACTTGGATGTGCTGTTTTCTCCACTGCGCTTCACAGCTGAGGCCATTGTGAAAGCTCTGCAGATTTATAAACGTGGTACAGATCGGTTCGTAGACGTGACGTGGAACGAGCTGAAGATGGAGGTCACACTGGCAGTGGAAAATGAGctacAGAGCAGTGTGACGGAGTTCGAGTTCTCTCAGGAGGATTACCGGATGCTGCAAATGGAGTTTTGGAGTAAGTTTTACGCCTGCTGCCTGCAGTACCAGGAGGCACTGTCCACCCCTCTCGCCCTGCACATCAACCAAGCCACCTCCATGGTCTGCCTGCTCAAGAAGggttTTGTTTCGTTCCTGCTGCCCTGTTTTGCTGTGGATCACCTGTACCTATCTGCTGATGAGTATCTGACATCGGAGGAGGAAACACCTGTGGCTGAAGGAGaCCCTGATCTGGGCAGTGATATCCTGAAGCTGGTGCAGTGTCTGCGGATGGTGAGTGACTGTGTTCAGGGTGAGATGGCGTTCGAGATGGAGAAGgcgctggagctgctgctgtctcCAGAGAGAGCTGCAGAACAGGTGCTGGAGAGCCTGCTCGCCAACGACAGTGATAATGTGATTGAGGACATTACCAATAAATTGCAGAATGTGGGCAATCCCCTGGCTGCCATGGCTGCTCTGCTCAGAGAGCTGGATCTGGAGACTGATGTGGAGATGGGGCCAGAGCCAACAGCTCCCCCTGCAGGTCAGTCTCTGAGTGTGCGGATCAGTCTCTCCCAGCTCTATGGCAGCAGTGTAGCGGTCAGTGTGATTTGCCAGGCAGTGTGTCAGATGGCGCTGACCAGGGCACTGCTGTGCAGAGACCTGCTCATCCTCCAGCACCTCTACCTCCGTCTTGGAGACAATATGCTCCTTGCAGGCAGTGCCCAGTCTCTACAACTGCAACAAGATCTGATCCCCCGCTGCTCTCACCTGCTCTGTTGTTATTACCTGCTGAAGCAGCTCAGCCAAACACTTGCCTCACCTGTGCCAGTCGATACACTAGATGCTAACCTGCAGCACCTTTCTGTGTTGGAGCTTTCGGACTCAGCAGCGCTGGCGCCCAACAGATCAGtgttgaATCCTCAGACGGTGGTGGAGCTGTTTTATCAGAATGTGGGCCGTAAGGTCATCATCTCTCAGCTGTTTGGTCAGAGTGATGCTCGTGCAGCACAGAGTCCGCTGCACTggcctcagctcagctccagtgTGCTCACAGTCCTGGGACAGCTGCTTTGGCCCAGTAACCCCAACTTCATGTTCCCAGAGTGCATGATGGGAAATTGTCAGTACACACAGCTGCAGGAGTATGTGCGTCTGATTCGTCCGTGGTGTCAGGCGAATGTAGGCTCCTGCCGGTTTATCCTGGGTCAGGCGTATCTGGCGAGTGGAGAGGGGCAGAAGgcattgcagtgttttcaggAGGCGGCCCCAGAAGTGGAGAAGGAGGAGTTTTTGATGAAACTGACTGGATCAGAGGAGGAGGCGGGATCTACAGCACCGCGCTTACTTTATTACAACAAGGTTCTTCGACTGCTGGAAGATGTTGGTTTGCCGGAGCTGGTGATTCAGTTGGCTACGTTGGCCATATCAGAGGCGGTGAATGATGAGAGAAGTCAGGCTGCTCTGTGGACACGGATTTTTAAGCACCATCTGGACCTTGGGCACAACAAAGAGGCCTATGAAGCCCTGACACAGAACCCGGACTCCAGCAGGCAGTTGGACTGTCTGCGACAGCTGGTGGTGGTTCTGTGTGAACGCGCTCAGCTTCAGGATCTTGTCCAGTTTCCCTACGTCAACCTGCATGAAGAGGTGGTCAGTATTATTGAGTCTCGTGCTCGGGCAGTGGACCTGATGACCCATAATTACTATGAGCTTCTGTACGCCTTCCACATCAACCGCCACAACTACAGGAAAGctgGTACAGTGATGTTTGAGTATGGTATGCGTTTGGGACGTGAGGTGCGGACACTACGAGGTTTGCAGAAGCAGGTGAATTGTTTCCTCGCCGCTCTGAACTGCCTCCGCCTCATTCGTCCAGAATACGCCTGGATAGTCCAGCCCTCATCCGGACCTGCTTCTGATCGACCTGGAGCTTCACCCAAGCGGACTCATGACGGAGAGCTGGCAGCAGCTCCAGTGAACCGGCAGATAGAGATTCTGGAGCTGATTGATCTGGAGAAAGAGTACATCCTCTCTCGCTGCCGCCTCACTCTCGCCCAGCAACATCCTCCGTCAGCCGCTATAGCAGGCAGTGCCTCAGCAGTGGAGATGGTGGCTCTTCTGGTCCAGGCTGGTCTCTTCGACACAGCGCTCTCTCTGTGCCAGACGTTCAAACTGCCCCTCACTGCTGTCTTTGAGGGTCTGACCTTTAAGTGTGTAAAGCTGCAGTATGGAGGGGAGCAGAGTCAAAACGAAGCGTGGAACTGGTTAGCAGCCAATCAGCTCCCAAGTCTCATCACCACTAAAGAATGCAGCGCTACAGACGAAGCCTGGAGACTGTTAGCTTCATACCTGGAAAAGCATCAATCCCAGAATGCTCAGTACCATCGCTGTGTCATCAATAGGCTGCTGTCACACGGGGTGCCCGTACCTGACTGGCTGGTTAATGCTTataagGAGGTGGACGCTGCAGCTCTTCTGCGTCTGTATCTGAACTACGATCAGCTGGAGCCTGCAGCGGAGCTGGTTCTGGAATATGTGGATGCTCTGCTGGGAAAGGGACACCAGTATTTTGGAATAGAGatgCCACTCTCTGCTACAGCTCCGCTGGTCTGGTTGCCGTACACCTCGATCGACCAGCTGCTCCACAGTCTGAGGGACAGCCAGGCCAACAGCAAGGTTTATGAGAAGCTGAATGTGAAGCTCACAGATTACCACAGACTGGTGGAACAGAGCACTCAACACCGCCTGCAGGCCCACTGAACATACCCTGTCTCAGCACAGTGCTTCACCTCTGTAGATCCACACCTCCTCGCTGGACTTCATTTTTCTATTAATAAGCAGTTTTGTTAACTATTttatatgcaataaaatgtGGTTGTATTAAGAGCAA

Function

symbol description
nup160 Predicted to be a structural constituent of nuclear pore. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 19. Orthologous to human NUP160 (nucleoporin 160).

NR:

description
nuclear pore complex protein Nup160 isoform X2

GO: NA

KEGG:

id description
K14303 NUP160, NUP120; nuclear pore complex protein Nup160

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684356.1 True 4492 mRNA 0.54 36 28310866 28367957

Neighbor

gene id symbol gene type direction distance location
adat1 NA coding downstream 117801 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 147513 28156767 ~ 28163353 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding downstream 1077276 27026494 ~ 27233590 (-)
LOC111195771 NA coding downstream 1158566 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 1199828 27108299 ~ 27111038 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 104564 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 115534 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 234933 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 300773 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 326209 28694166 ~ 28701575 (-)
G208649 NA non-coding downstream 18655 28290609 ~ 28292211 (-)
G208647 NA non-coding downstream 23969 28286532 ~ 28286897 (-)
G208640 NA non-coding downstream 100907 28209395 ~ 28209959 (-)
G208551 NA non-coding downstream 175524 28135141 ~ 28135342 (-)
G208542 NA non-coding downstream 1045907 27264576 ~ 27264959 (-)
G208665 NA non-coding upstream 5134 28373091 ~ 28381368 (-)
G208683 LOC108439052 non-coding upstream 50678 28418635 ~ 28421081 (-)
G208702 flnc,LOC108439053,LOC108439063 non-coding upstream 93571 28461528 ~ 28463518 (-)
LOC111195846 NA non-coding upstream 123394 28491351 ~ 28492233 (-)
LOC111195852 NA non-coding upstream 128494 28496451 ~ 28497291 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 42497 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1654682 26655443 ~ 26656184 (-)
G208046 NA other downstream 2098025 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2193234 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2222451 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 294226 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 415126 28783083 ~ 28860774 (-)
G209090 NA other upstream 1656004 30023961 ~ 30024550 (-)
G209127 NA other upstream 1794500 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1833574 30201531 ~ 30318216 (-)

Expression


Co-expression Network