LOC103023888 (ntrk3a,LOC105018511,LOC108269325,LOC108438531)


Basic Information

Item Value
gene id LOC103023888
gene name ntrk3a,LOC105018511,LOC108269325,LOC108438531
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30061148 ~ 30110040 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684361.1
tctccagacGTGCAGCACATAAAGAGGAGGGACATCGTGCTGAAGCGGGAGCTGGGCGAGGGGGCCTTCGGGAAAGTATTCCTGGCAGAGTGTTATAACCTCAGCCCCACCAAGGACAAAATGCTGGTGGCTGTCAAGACTCTGAAGGACCCCACCCTGGCAGCCAGGAAGGACTTCCAGAGAGAGGCGGAGCTCCTGACCAACCTGCAGCACGAACACATCGTCAAGTTCTACGGCGTGTGTGTGGACGGTGACCCCCTGATCATGGTGTTCGAGTACATGAAGCACGGAGACCTCAACAAGTTCCTCAGAGCTCACGGTCCTGATGCTATGATCCTGGTTGACGGACAGCCACTGCAGACCAATGGGGAGCTGGGCCTGTCCCAGATGTTGCACATAGCCACTCAGATCGCCGCAGGGATGGTGTACCTGGCATCCCAGCACTTCGTACACAGAGACCTGGCAACCCGTAACTGCCTCGTGGGTAACGGCCTACTGGTCAAGATCGGAGACTTCGGAATGTCCAGAGACATCTACAGCACTGACTACTACCGGgtTGGAGGTCACACGATGTTGCCCATTCGCTGGATGCCACCGGAGAGCATCATGTACAGGAAGTTCACCACAGAGAGCGACGTATGGAGCTTCGGAGTCATCCTCTGGGAAATCTTCACTTATGGCAAGCAGCCGTGGTTCCAGCTGGCCAATAATGAGgtaaTCGAGTGTATAACTCAAGGTCGTGTGCTGGAGAGGCCGAGGCTGTGTCCTAAGGAGGTGTATGACATCATGCTGGGCTGCTGGCAGAGAGAACCTCAGCAGAGGCTCAACATCAAAGACATCCAGAAAATTCTCTTTGCCTTGGGAAAAGCCACACCGGTCTACCTGGACATCCTGGGCTAGAGCGGGTCCGAGCCGGCCCGGCAGTCAGACGGACGGACGCACGtacggacggacggacagacggacggacagacggacggacggacggacgcgTAAACCCAGGAATAACCCAAACGACGCGTACCTTACACACCACTGTCAGACACCGGCGGAGTGGGGACGGACTTAAGTGCCTGCTACACCTTTCCAAATACTGGATAAGAGTCTTTGAAAAgcacttttacattttgtttaccTGCATATACACTTGTACAGTTCTGCTGGATGAAGACGAGAAGTCTCTTGAGgagtttatttcttcttttttttttttggagatttttttcaTAGCATTCTTCTAAAAttcacaaaacaacaaaaaaaaaaaatctaaaaaaacaacCGGAAAAGGATAAAAAAGGAATATTTTGTTCCCTTTCAGTTTCCTGACAGCATCACAGAAGATTATAAACATCTCCCGTGCTTaccctcttctttttttcccattttataactatatataaatatataatatatttttatttatttagcttttttctgCGGATGTCTGCCATGTTTCTTGCTGAGGGTACATCACCTTTTTGAGATAACTGCTTACCGTTGCCAACCCGCAGAAGAAAAAAAGCCTTACTGCGTTTGGGGTTGGCTCCAACTCCCCTCTGACCGCAGAGGAGCGTCCAACAGGGCTTTTAATTCCTATTTAAAGGAGCTTTTTAGCCAATCGAGGAACTTTATGGAACGACGGAAACACCAATCAAGAATCCAAGCAAAggaaaagtttatttaaacaacgaaaaaaatgaatgtatataatgtaaattTCTGTGTCACAAACTACAGTATGGTAACTTATTTCATTTTCCTCTTTAGATGATTTTAGTTCCTTGGCGTGATGTTACAGTGAGTGGATTCTATAAATATTttgataatattttaatgttttttatttttccacacACTCATTGCAATgtatgttgttttattgatttcaaTCCTTTCCATCTCATTCTttactttctttacttttacttttgtctTCTTTTAGGGATTTGTGATAAAACAGTGACTTTAAGAGGACTTTGAAATGAAGGTAGAAAAGCAGTTAGATCGAGTTTCATAGCAGAACAATCGCACTTCTCCAAAAGATGCCATAGTTCCCCTGAAAAATGCTTCAGATGTCATAATCGCTCGTTTCATGTTATAGATCCTTTATACACATTCGTGAAATTTATTCGGACgtcaataaattaaattaaataaatgtataactgACATGTTTA

Function

symbol description
ntrk3a Predicted to enable neurotrophin binding activity; neurotrophin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within central nervous system development and negative regulation of apoptotic process. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human NTRK3 (neurotrophic receptor tyrosine kinase 3).

NR:

description
NT-3 growth factor receptor precursor

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007417 central nervous system development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684361.1 True 2180 mRNA 0.45 5 30061148 30110040

Neighbor

gene id symbol gene type direction distance location
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding downstream 589268 29434479 ~ 29471880 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 903580 29043975 ~ 29157568 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding downstream 1040221 29019220 ~ 29020927 (-)
LOC103034116 NA coding downstream 1172263 28871840 ~ 28888885 (-)
LOC111195773 NA coding downstream 1318555 28735186 ~ 28742593 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding upstream 58061 30168101 ~ 30195378 (-)
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding upstream 253253 30363293 ~ 30390245 (-)
LOC103031457 NA coding upstream 1144307 31254347 ~ 31260863 (-)
LOC103031775 NA coding upstream 1154531 31264571 ~ 31266955 (-)
LOC103032100 NA coding upstream 1167137 31277177 ~ 31282581 (-)
G209089 NA non-coding downstream 38427 30022099 ~ 30022721 (-)
G209058 NA non-coding downstream 76844 29522085 ~ 29984304 (-)
G209082 NA non-coding downstream 175974 29883646 ~ 29885174 (-)
G209067 NA non-coding downstream 347910 29709123 ~ 29713238 (-)
LOC111195775 NA non-coding downstream 413573 29646866 ~ 29647575 (-)
G209104 NA non-coding upstream 18138 30128178 ~ 30128661 (-)
G209121 NA non-coding upstream 45034 30155074 ~ 30156513 (-)
G209124 NA non-coding upstream 49837 30159877 ~ 30160330 (-)
LOC111195840 NA non-coding upstream 213522 30323562 ~ 30327730 (-)
G209166 NA non-coding upstream 327278 30437318 ~ 30437788 (-)
G209090 NA other downstream 36598 30023961 ~ 30024550 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 1200374 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 1365448 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 1792779 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 3404964 26655443 ~ 26656184 (-)
G209127 NA other upstream 52417 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 91491 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 403867 30513907 ~ 30803356 (-)
G209224 NA other upstream 988804 31098844 ~ 31099861 (-)
G209256 NA other upstream 1163828 31273868 ~ 31274402 (-)

Expression


Co-expression Network