LOC107197706


Basic Information

Item Value
gene id LOC107197706
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36790029 ~ 36792803 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684365.1
ATGAACCCCAATTCCAGCTGGGTGTTGGAGGACGGCGTGTGGGCAGGTAGAGCTCAGGTGGTCCTAATCGCGGTGGACTGCATGTTGCTTCTTGTGACACTCGTGCTAGGATCAGCCGCTAACCTGTTCGTGGTGCACGCGGTGCGCCGCCACAAGTCCCTCCAGACGGCCACCAACGCTCTGCTGGTCAACCTGGCGCTCGTGGATCTGCTACGCTGCGTCACGGACTGCccgctgctgctactgctggtCGTGCTTCGGGTGCAGGGGCGCGTGGACGACCTCGGGCTCGCGCTGTGCAGTGCGCAGCTTGCCTGCTTCTCTGTGAGCTGTGGTGCGCAGTTGCTTACCGTGGCGGGGATCAGCCTCGAGCGCCACCGAGCCGTCACGAAACCTTTCGAGGGCGGCGGGGGCGGTGGCGAGCGAAGGAAGCGCGTGACCGCGTGGATCCCGTTTACGTGGGCCGCGCCCGCTCTAGCATCAGGGCTGTGCGCGCGTTACGCACGGGACTCGCCCGTATACGCGCGGTGCAGAGGTGTGCTTGTGTCCGAACTCCATACATACGACTCGTTCGGTCGGTACGTCCTGTTGCCCGCGTGGTGCGCGTGCTTGGCAGTAATAGCGGTGTGTTACGCGCATATTTTCATGGTGGTGAGAGCGCACGGGAGGAAGATATTCGACAAGGGCGTGTTTCCCCCACCCGGGAAAAAAGGGGACGAGAAAAAAGTCAAAGATAAAGAGGGGAAAGGGAATGTGGACACGGTTAGCGCGCACGAGGCTGCAAAAACGCATTTAGCACCAGAGCTGAAAGGAGCAGGCGAGACTGTTGACAGTGTGCTGCGTGACGGGGGCGCGCAAAAGACCCTGACCCCGAGTCAAACTCCCTCTACAGACAGCGTGACTCTAGTGTCCGAGCTGTGCGGGAACGAGCCTGATCCACCTGACCAGGCAGAAACAGGACAGGAGCCAACAGTGGACGCAGAATGCGCGTCCACGGCGCCCTGTGACACCCAGAGCTCGTCTGatacgcaccaaaatgcgcaggAACTAGAACCCCCTCAGAGCGTGCAAGAGCACGTGCCTGAAGTCCTGGACGTAGAGGACGAGGAGACATCTCCAGGTGAGGCTCAGAGCGTTCAAGAAGAGCACGTGCCTGAAATCCTGGACGCGGAGGACGAGGAGACATCTCCAGGTGAGGCTCAGACCGAGCACGAGAACGCGCCTGAACGTCTAGATGTTGAGAGCAATGAGGGGTCTCCAGGTGAGGCTCAGAGCACGGACGAGAACGCGCATGACCAGCCACACGAAGACGGCAAACAAAAAGCGGACAATGATGCGCCACAGGACATACAGGAGGACACTGCCCAAAGCGTGCAGGTCAGCGCCCCCCAGGAAGAAGAGGCAATGGGGGCGGTGTGCATGATGCCATCTTTCGCCAACAAGGAGAAAGCTAACAAGAAGAAGGAGAGCAAACTGGCCAAACGCTCCGGATACATCGTCTTCACTTTCCTCGTCTTCTGGTTGCCACTGATCGGCACAATAGTGCTGAACATCTTTCTGAACAGAAAAGAAGTTCCAAGCGTGAAAGTCGTTAACGAGCTGGAGGTTCTTGCAGTCTGCATTGCCTGCATGACCTCACTGACCAACCCCATCATTTATGCAGCAGTCAACCCTCAATTCCGCAATGAATTTTACTACCTGAAGAACAAATGCAAAGTACTATGTGCAAAACAATAATCCTTTTTGCTATAATAAACCCCGCCTACGCGAtgcggggaggggaactgtgatgatgttgcttggggtacagttcagaacagcttgagacGGTTCTCCAGCCAGGTCCCCCCCGCAGCTAGGTGAGTAATGAAGATGAGTGATGAAGACGAGGGTGGTGATGGGGTGGAGGCGGGTGCGAGGTAGAAAGTCACGTAGGTGAGCACCTAggaggtttatatatatatatataggaccagggggaggagctcgggaaattgaggcgtggttcatatcccaaaattttgtGAATTCTTAACACTTTATAGTCTGTAACTgggttttaaaagtaataaaaaaaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684365.1 True 2083 mRNA 0.56 2 36790029 36792803

Neighbor

gene id symbol gene type direction distance location
LOC111195785 NA coding downstream 98705 36689599 ~ 36691324 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1526621 35168540 ~ 35263408 (-)
ctso NA coding downstream 1622804 35147631 ~ 35167225 (-)
aga aga coding downstream 2004362 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 2058193 34727162 ~ 34731836 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 579 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 29480 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 35088 36827891 ~ 36836649 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 159078 36951881 ~ 37003635 (-)
LOC103034997 NA coding upstream 211105 37003908 ~ 37038731 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding downstream 19032 36769669 ~ 36770997 (-)
G210074 LOC107712756 non-coding downstream 22478 36765414 ~ 36767551 (-)
G210065 NA non-coding downstream 55823 36733790 ~ 36734206 (-)
G210014 NA non-coding downstream 172221 36617584 ~ 36617808 (-)
G210012 NA non-coding downstream 286134 36503639 ~ 36503895 (-)
G210110 NA non-coding upstream 12328 36805131 ~ 36805452 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding upstream 22868 36815671 ~ 36822106 (-)
G210120 NA non-coding upstream 78776 36871579 ~ 36871944 (-)
G210169 NA non-coding upstream 314897 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 334891 37127694 ~ 37128205 (-)
G210059 NA other downstream 79286 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2030938 34709771 ~ 34759091 (-)
egf NA other downstream 2133545 34620461 ~ 34656484 (-)
G209660 NA other downstream 2515436 34234918 ~ 34274593 (-)
G209640 NA other downstream 2577180 34170767 ~ 34212849 (-)
c24h12orf73 NA other upstream 16504 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 372231 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2734830 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2820912 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2850741 39643544 ~ 39795943 (-)

Expression


Co-expression Network