Gene
RNA
| Item | Value |
|---|---|
| gene id | G51930 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 795914 ~ 796164 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU59167 | True | 251 | lncRNA | 0.31 | 1 | 795914 | 796164 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_00761898_00767155 | PIGA | coding | downstream | 27636 | 761718 ~ 768278 (-) |
| CI01000009_00757227_00760184 | ASB11 | coding | downstream | 35730 | 757102 ~ 760184 (-) |
| CI01000009_00729688_00746565 | SYTL5 | coding | downstream | 48442 | 729369 ~ 747472 (-) |
| CI01000009_00698847_00703072 | NA | coding | downstream | 92842 | 698546 ~ 703072 (-) |
| CI01000009_00694683_00695141 | MID1IP1A, MID1IP1 | coding | downstream | 100698 | 693973 ~ 695216 (-) |
| CI01000009_00812290_00814461 | CX50.5 | coding | upstream | 15202 | 811366 ~ 814575 (-) |
| CI01000009_00830503_00840457 | NA | coding | upstream | 33517 | 829681 ~ 840961 (-) |
| CI01000009_00863406_00870786 | NA | coding | upstream | 67113 | 863277 ~ 872274 (-) |
| CI01000009_00884784_00892234 | CHAF1B | coding | upstream | 88417 | 884581 ~ 892234 (-) |
| CI01000009_00895893_00912998 | MORC3A | coding | upstream | 99263 | 895427 ~ 912998 (-) |
| G51928 | NA | non-coding | downstream | 2483 | 793096 ~ 793431 (-) |
| G51901 | NA | non-coding | downstream | 12185 | 779045 ~ 783729 (-) |
| G51923 | NA | non-coding | downstream | 19394 | 776284 ~ 776520 (-) |
| G51922 | NA | non-coding | downstream | 21587 | 774036 ~ 774327 (-) |
| G51920 | NA | non-coding | downstream | 23445 | 772120 ~ 772469 (-) |
| G51931 | NA | non-coding | upstream | 213 | 796377 ~ 796616 (-) |
| G51932 | NA | non-coding | upstream | 1074 | 797238 ~ 797442 (-) |
| G51933 | NA | non-coding | upstream | 7592 | 803756 ~ 804023 (-) |
| G51909 | NA | non-coding | upstream | 19857 | 816021 ~ 816397 (-) |
| G51982 | NA | non-coding | upstream | 169725 | 965889 ~ 966472 (-) |
| G52098 | NA | other | upstream | 605768 | 1401932 ~ 1407627 (-) |
| G52410 | NA | other | upstream | 1755560 | 2551724 ~ 2562533 (-) |
| CI01000009_02885473_02893975 | NA | other | upstream | 2087524 | 2883688 ~ 2893975 (-) |
| CI01000009_03261739_03262843 | NA | other | upstream | 2465039 | 3261038 ~ 3262843 (-) |
