LOC103023908


Basic Information

Item Value
gene id LOC103023908
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38079387 ~ 38109064 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684368.1
ttaatgaattaatttattatttatttatttttacagttttccagTGTTCCATTTCTGCTCTTGACAATCAGAATtgcagaaagaaaagaaatcttTACTATATTATCAGATCTTTTTAAATTTTGTGTCTTGTACCAAATGTAGTTTGCATTATACCATGAGATTTCTTTTTACAAGATGAAACAATTATTTAATGTCACACATCCAAAAGGCTTAGTGTCTTTAGTAACTGCTTTAGATTAAATAATGCTTCACACACTCCTTTTGCATATGTAACTCAATAAATATCGCCCATGTGAGTCTAaagtttttcatcattttttgtcTCGTTAATCTTTATCTTCCTTACGAATAGTGTTGCAGGTAAGCACTTCCTTCTGTGTGATGATCTGTGTGACGATGATCTCATAAAACGATCAGGATGTTTGATGCGTATTAAGGaaacacataaaatattttaattaagtgattatttacttttattaattgAAGTACTTCACTTTGGATGATCatcttatattacattattatgctCATACCACTCAACCACCACTACCCAATCCAACTGGATGAGAAACAACGAACTTCACATTATACAGTGTGTAAGTATGCTAATCCAGGCTAGATTTGATGCAGGATTGGCTTGGATATATGCTTCTGTCTTGCTGATTTTTGAAGGTAAGCCCTATTCAGCTGACCCCTACTTGGACAACAAGAGGGACCTTGACTGCATACATATGTATGAATTTCTCCTTATCTGCAACCTTTATTGACAGGTGGATGACAGTCTGCTACTCATCTTCCTTGACCAGCTGCACCAGCCTTTGATCATCTTCATCTGACAGTTTTATcatcataagaaaaaaaatcttagtccCGCTAGCATGTCTCAACGTTACTCCTACAGAAACTCTCCGGGTGATTATCAATCACATGAAGATGCATTTTCCGATTCGTACCAGAGAGACTCGGCCGTTTACAGGGCGAGAGATAGATCAAGATCTCAGGAATCGGTGCATCCTACAGCATCTTCCAGCGGAGCTGCGGACTCTACTGTTCTTGTTCCAGGAAaggctctttcttttcttcataGCTGTGGACTGGACGCAAGTGACCTCTCAATGCTTGCAGATCTTCCTGAGCATCTCATCACCGTCGAGACACTCCCTCAACTACTTTTACAGATAAAAGAACGAAAATCATCCGACACTTCCTCATCTAGGGCCAGCGCAACACAACCTGTCATCGATACATCATCTCATGCCGTGGCGAGTAGCAGCTATGGAGACGTCATTGAGTATCCAGTGGATCAATCTACACATTCAACTTTTCCTCTCCCACCAGAGCAAGTTCAATGCTGGCAAGACCGCTGGGGGAACCCTCGAAAAACTGGGTTTGTGGCGAGCACTAGTGCTACTGCCACATCCACCAGCCATCAAGTGACCAATGTTCGCGATTATGGCCACTCCAGTGAAGGAACCCTTTATTATGATGAACAGCCTTACTCCTCTGCAACCTCACAGACATCGTCAACTGCTTCACACTCTTATGATGAGTACAGCAGTGGAAACACGCAAAATTATGAGCCTTTGCATCATGTTTCATCAGACACTGTTTTTAAAGTGCCTACTTGGAGGGAGGCATCAGCCTTCAATGGCGTACTTCCTACAAGATTTCCTTACACGTGCGTTCTGTGCAAAATTACTGTCCATACTGAAAAGgactgGTCTGCGCACATTAAAGGTTCCCAGCATGCCAACAGTCAGCGCCGACTTGTTAAACGGTTTCCAAAGTGGAATCGCAACAATGACTCGGCGACAAGgaTTGAGTCAGTACATCAGCCCAGATCCAAAGAAGGTAAGAAGgactgGTCTGCGCACATTAAAGGTTCCCAGCATGCCAACAGTCAGCGCCGACTTGTTAAACGGTTTCCAAAGTGGAATCGCAACAATGACTCGGCGACAAGgaTTGAGTCAGTACATCAGCCCAGATCCAAAGAAGATCCAGGTTATAATGTGCCTACGAGGAAGGAGGCATCAGACTTCTATGGCAGAAATCCCCCAATATATCCTTACCCATGTGTTCTGTGTAATGTTACTGCTGCTTCGGAAATGGAGTGGAGAGTGCATGTTAAGAGTGTTTCACATGCTAGCGGTCAGCTCAAGCTTTTGAAAAAATACCCAAGCTGGGATCAGAGTTTTGAATCTTCTAGAAGGAATGATGTTCCGGTAACAACTGTGACAACAGTGACAACAGAGACCACACCGGTCAAACCCATTGTGAAAAGAGACCCTGTTCATAAGGTACCAACCCTTAAGGAGGCATCAAACTTCCGTGGCAGAGCTCCTTCAGTTTTTCCTTCCACATGTGTTCTTTGTGACTTTACTGTCCTTTCTAAAAAGGAATGGGGAGTGCATGCTCGAAGTGCTCAGCATGCTAACAGTCAGCTGGAGCTTGTGGAAAgGTATCCAGAGTGGGATCAGAAGATTGTCTCTGCCAGGAGGAATGAGAGCAAGGTGCCAGCAGACCAAACCACAGAGAAAAAAGAAAAGccaaaaaagaagcaaaagaagGAGGACAAGTCAAAACCATCAGTTACCTGTCATGGGAAAGTGGTCACCGTTAAATTTGGAGCCAGTAAAGTGGAAGAAAGTTACTTGACAAAATTGCTTGGCCAGTTTGGAAAAATTGTGAAAGTCATGATGTTCCCAACACTGGCTTTGGTGGAAATGGGATCAAAGGAACAGTCAGATGATATAGTGAAATATTTCACTGATAATCCTTTAGCAGTTCAAGAAAAACCAGTGGAATTTTCTGTCTCTACAGCTTTCAGTGTACTTCAGAATAACCGAGTTGTGTGCTTCGCCCCTTTACCTGCTGGAGACGGTATCAGTTCCGAGTTGTTGGCCACTGCCAAACGTTTTGGATCTGTAAAAAACTCCTCGTTCCTGCCAAGCCGGGGGTATGTGGAAATGATCAGTGTATCCGAAGCACAGAAGTTGGTTGACCATTATAACGGCAGGCCACTTAAATTAAAAGGAACCGCAATTCACGTCACCTTGTCCTCTGAATATGAAACACTTGACTCATTAATCGATGATGCCCAGTCACAGTCTAGCCCAAGAAGACGCAGTAGACATAGGGACAGTCCTAGCCCTAAGAGAAGACGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAAAGGACCCGCTCTTCAGAGAGAAGGCGCTCTTCAGAGAAGACCCGCTCTTCAGAGAAGACCCGCTCTTCAGAGAAGACCCGCTCTTCTAGGAGATCCCGATCAAAAGAGCGAGATAGACCGCGAAAATCCACAGACAGCACAAAAACCTCTTCAAAGAAGTCATCAGTTTCCTCAGGTTCTTCTGCTAAAGATGAATCCAAAAAGTCAAGTGAGGATACTAAAGCCAAGATAACTGCCAGCACTGATGACACTGCATCCGTACAATCAGACAGTGATGTTGAAGGGCTAGAAGTTATTGCAGATGATGGAGAAGAACTGCAGCATGATGATCATGAGCCCACAGATGACGAGAAGATGGACCAAGACCAGAAAACTGGAGAAGCTGCTCACCTAAATAATAAGCCATCCAGTACCCCAGTAAAAGTGAAGGATTCAACCAGTCACAGCCAGAAGTCTGACATTTCAGCTACATCAGGTAGTACTAAAAAGGATCAAGCTGCAGGTCAAGCATGTGAAGCCCTTGAAGAAGAGGAGGAGGATCCTGACTTCCCGTACAACCTTGATAACTGCATCACTTTAGATGAACTTGAGGAGGAAGCATTATCAGATGGTGAACAGAATTCTTCAGTGAAGAAGAACCCAGagGGAACACCAGAGGAAATTACCAAAACTGTAAATAGCCCAACTTATCCCACCTTGTCTCACTCTGAGGATAGCAAACAACCAGAATCACCGGAAGACAGAAATATTAGCAAAACAGGTGCTGAAATCAAGAGCACAGAAGTCATAGAAACTGTAAATCTGCCAAGCCCTACTTCCTTAATGGACTCTGAGGACAGCAAACAACCAGAATCTCAAGAAGACAAAAGCATCTGCACTACGGCTGCTGAGATCAAAAACTCAGTGGTAACTGAAACTGTAATTTGTACAACTGCTGCTTCCTTGACGGAGTCTGAGGATAGCAAACCAGAAATACAACCAGTATCACCAGAAGACAAAATTACCAGCAGTACAACTGATGAGACCAAGAGTTTAGAGGATGCATCAGTTAAAGATACAGCTGATGAGATTGTAGAGCAACacgaagaagaaaaagacaCTGATGATATAAAGAAAACCTTTGGGAAAGTACTTTACATCAGAAATCTTCCAAAGTCTGAGGACTACACAGATTCAGATTTTATTAATGTTGCAAAAAGATACGGAGCAGTAAAGCACTACTATTTAATTCGCAATGGTAACAAGGGATTTGTTGAGATGATGCATTCCTCTGATGCCGAAAGAATTGCAGCTGATGCAAACAATCAAGATGTTGCATTCCGTGGTAACGTCTTGAAGATTAAAGTGTCTGAAAAGTACAGCACTTTGCCAGCAACAGGGTTTAATGTTGACAATGTTGattctgaggaggaggaggatgatggcAGTGGAACAGCAAACTCTAAGGAGTCCACTGATGAGAACCAGGGTGTTACAGAAGCAGAAGCTTTAACTGaaccaaacaaaccaaatgAGCCAGTGGGAACTGAGTTTATCCGTCCTGTAGTTGGCTACTTCTGCAACCTGTGCAATGTCATCTATGCCAGTGAAGAGGAGGCAAAAGATGATCACTGTAGGAGCTCATTACATCATGAGAAAGTGAAGGAGCACAAGAAGAACAGTGCCATGTCCCAGAAGCTGACGCCTGATGGTGGTCAGAAAGGCTTTGCTGTTGGCCGTGGGCTCTTGGCTGCCGCAGaaactttaaattataacatggTTGAATCCAATCCCGATCCCTACAGCTCCACTTCTCAACACATTGGTGGAATGGTGGGCTTGGGAGGAGGGGACAGACAGGACCATGGCTCTCAGCTCCCCAGCAGAGTGGGAAGCCACCTTAGCAATACCATGAAACTGTTTGCCAGTCTTGGTCTCTCACCTGCCGACTTGGATGCATTGGCACAGATTCCAGAGGAAAACATCAGTGTGGAGACACTTCCCCATCTCATCATGCAGCTTAAAAATCGGAAAAATCTATCTGGTGAACTGCCGTCACTATCCTCAGAAACTTCCTATAGAGAAGGCCGTGATGACTGGGGGGACATGCAGGGAGGACGTCTGGACCGATCCTCGGCCCACAGTCAGAGCCGTACTTCCCAGGGCAGTTTTGGATATAGTTCCATGCAAGACCTCTCTACTCGTGGAAATGATATGCATGAAtatggtggtagtagtagtagcagcagcatcGCCAGAGACTGCCAGTATTCTGATCTTTCCACTGACCACTATCATGGTCTTGGCATGGGTTCGTCTTCAAGATCTGACGACCTCTTTATGCAGCGAAGGATGGGAGCTCCCTCTCAGGGCAAAATCCAGGATTTCTTGGGAGTCATGCCACAAATGTTTCCTCATGTGTGTGCCCTTTGTGACTTTGATGTGCATTCCACCATGgAATGGAATCAACACACAAATGGAATGCGGCATGCCGAAAACAGGAAACTCCTCCTGCAGTTGTACCCGGATTGGGATCCACATATGTCATCCGAACGAATGTGCGGGTCCTTCTCCTTTGACTCAAAGGGCTGGTCTGAGGGGTTACTTGGGGCTGGTCCGTCTAGTGGTGCGAGACAGAGAACGGGAATGAATTCTAACTGGGGATTGGATTCTGGTATGGGTATGCCAAGCAAAATGCAGTCGTTTCCTATGACACCAAAGGTAAGAAGCAGAGTGGTAGTGGTCAAATATAATCGGAAGCCAATGTTGTCCAACCTGTTTGCTCTGGCCCATCCATTTGGAACCATCCGTGAACATCTTGTACTCATGAACAAGGCTTTTCTTGAGTTTAAAACACATGAGGAGGCTCTGGCAATGGATAATTATTATCGGAAAAAGCCAGCCACTTTACATGGGAATGAAGTGCATATCTACATATCCAAGGAACTGTTGGTGATTGAGAAAGATGACCGAGCAGAccgagacagagacagagacaataaaaatgtaaagacaGGGACCAGTCCTGTGGTGTTCCTTTCTAATTTGCCAAGGGACAGTGAGAAGAAAATGGAGTTACTCACAATAGCTGGTCGATTTGGCACTgttgaaaaacatattttcttaaATGATGAGGCATTTGTACAGATGAGCAGTGCAGATGATGCAGATATGTTGGTGAGGTACTACACTGTCAATCCATTAAAAATTGCTGGGAGAAACATCCGTCTGAATATCTGCGCAAAGTACAAGAGTTTAAGAGTTCCACCTTGGAAGGCTGACCAAGAAAGACAGAATCGAGATGAGGGAAGCCGGAAGAGCAGTAGCAAAGCAAGTCACAAAACCTCGTCCAGCTCTCCGAAGACCACAAGATCCAAATCTAAGGATCGCTCAGCTGAAACCGAAGCAGATCAAAACCCCACAGAGGAGCACAAAGACACAGATGACCAGGATGATGTGGAGCAGGCTGAGGCTGATCATGAGAATGCTCCAGAGAATTTGAGTGAACTGgaAGGACTTGGAGAATCTGACTTCCCTGATAATATGGATGAGTTTGTGACTCTGGATGAGCTAGCAGAGGAGGAAGATGCTGAAATGCACGAGTCTAAATCCAGGGATAAAAGCTCCTCAGggAGATCAAAGCAGAGCCGTGAACTAAAAGTCGTCAATGTGGTTGGATTTAGGCGTGGCTATAATTATCTTGATGAGATTCTGTCTTTGGCCAAGCCTTTTGGGAAAGTGGTGCGACATCTGATCCTGAATGTGAGGCCTGAGgcCTTTCTTGAGCTTGCTAGTGAACAGGAAGCCAGAGCAATGGTTCGTTTCTACAATGGAAATGTTACACCATCTGTGTGTGGAAAAGCAGTGAAAATCTATCATTCTCATGTCTACCCAACCATCCAGATTGGCAAAGTAATTTATGTTGGACACATTCCGGCCTTTAAAACATCAGATGCATCCCTACTGAAAATTGCAGAGCCGTTTGGCAAAATCAAACGCTACGTTTTAATAAGGGGACGTGGCGAGTGTTTAATTGAGATGGAGAGGATTGAGGATGCAGAGAGATTTGTTGAGGCGGCCAAAGAAAATCCACCAACGTTTCAAGGCAAACCACTAGTTGTCAATATTAGCAGGAAATACACACAACTCAAACATGGAGGCAGACCTCCAGCCCCAGAAACAGAAGACAAACGACCATCCAAGAGAGATCGCTCTGACGAAGAAACAGCAGCCGAGGTCAGCAAAACTAACAGCAGTAAGGAAGAAGAGCCACCAACCAAGAAGGTCAAAGAGGGAACATCCTGTACAGATAATGTGGAGGGTGTACCAGCAGAGGAGAAGCAGCAGGAAAATGAAAATCAAGCTGAAACTAGCGAGAGTGAAGCTGAAACGAAAATAAAGAACACAGAGGAAAATAGCAGTGATGCAGCTGAAGCTCAGAACATGGAGAGCACATCGCAGAATGACGATTCTGATGCTACTGTTGTGCCTTCCGGTGTACCTTCTAAGAATGAGGAAAACAGTGAAGGTCTTACTGTTCCTGTGCAGTCTGTGAAAAAAACTACCCTAGACAGTCTGGGGCCATATGAACCTGATGTCCCAGTGGGTGCAGAGTTTGTGAAGATGGGATATTATTGCAGAGTCTGCTTCCTTTTTTACTCAAATGAAGACACCGCTAAGAAGGTCCACTGCAGCAGCCAAGCACACTACAACAAACTTAAGaaacacttgGAAAAGGAGAAGGCAAAAGCACAAAGAGAAAATATGACCAGAGAGTAACACTGGGAAGAACTGAAGCTATAGGAGATGATGTCCTTGGTACTATACAGTATTTGATAGTGCATGAGCTGTTAGTGCAGTATACTgatataatgtatattatacTGGTATAATGTATTTTCAGTAAGCTGATTCATTTGCcatattttttcccccttttttttatcttactaGATCCTAGAACACATTCATCTGCTGTTACTTTCTGTCTTGCCATATTAAAAGTATTCCTTCAACTATTTGCTGGTTGTGACTGATTCAGCACTACAGACATACAATAAAACTTTCATTATGGTCTGTCCCTTAAA

Function

GO: NA

KEGG:

id description
K13213 MATR3; matrin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684368.1 True 8335 mRNA 0.44 50 38079387 38109064

Neighbor

gene id symbol gene type direction distance location
LOC103022549 tmem216,LOC108416639,LOC108268819 coding downstream 176 38076129 ~ 38079211 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding downstream 3919 38050238 ~ 38075468 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding downstream 30905 38044021 ~ 38048482 (-)
glra1 glra1,LOC107717398,LOC107662012 coding downstream 302671 37694053 ~ 37776716 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 453448 37558694 ~ 37625939 (-)
LOC103036455 NA coding upstream 2981 38112045 ~ 38128787 (-)
LOC103038351 NA coding upstream 23828 38132892 ~ 38134329 (-)
htr4 htr4,LOC107664776,LOC107662017,LOC108269380,LOC107598324 coding upstream 38759 38147823 ~ 38256668 (-)
slc26a2 slc26a2,LOC107662016,LOC107575649,LOC107664781 coding upstream 243419 38352483 ~ 38361729 (-)
LOC103046861 LOC108417963,LOC100136477,LOC101077011 coding upstream 288367 38397431 ~ 38469288 (-)
G210445 NA non-coding downstream 44918 38025424 ~ 38034469 (-)
G210372 NA non-coding downstream 222014 37857038 ~ 37857373 (-)
G210365 NA non-coding downstream 253567 37825219 ~ 37825820 (-)
G210347 g3bp1,LOC107683011 non-coding downstream 395885 37677456 ~ 37683502 (-)
G210339 NA non-coding downstream 432518 37646192 ~ 37646869 (-)
G210448 NA non-coding upstream 13431 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 109211 38218275 ~ 38218728 (-)
G210457 NA non-coding upstream 162561 38271625 ~ 38271862 (-)
G210477 NA non-coding upstream 240895 38349959 ~ 38372198 (-)
G210506 NA non-coding upstream 411099 38520163 ~ 38520494 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 875002 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 1268891 36809307 ~ 36810496 (-)
G210059 NA other downstream 1368644 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 3320296 34709771 ~ 34759091 (-)
egf NA other downstream 3422903 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1418569 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1504651 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1534480 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1824052 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2252194 40361258 ~ 40363237 (-)

Expression


Co-expression Network