LOC111195727


Basic Information

Item Value
gene id LOC111195727
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13287852 ~ 13298774 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651764.1
TATCGTTTATGTGATCGACAAGGAGCCTTTGCAATGAATGaagctgtttttgtgtgtcAGTTGAAAATATAGGCAATGTACGACGATGGAAAATCTAATTATTTCTTTGCAAAACCTAATtaggcattaaaaaaaaggttaacgCCAGCGCCTGAAACcgtttttgtttaataatcccATTACTGACGGCTCATCATGTATAAAATGGCGCAGAAGGACACAAACTTTCCACTTGTTAAAGTGATTCTCCTAGAAAAAGGCGAGGCCAGCTCTACTGTAGCCCATTTCTTAGGATATGAACGCGATAGGAGACGGAATAAGATACATGGAAACGCTAGCTGAGCCTGTCTGTGCTGCGAGTGGATGATTGATGATGAAGAGGGCCAAGGCCgagcgcgcgcacacacacacacggctgaATGGAGCCGGGCCTACATGCGAGTGTATTGAAGCCAGCAGCCCAGGGGAAGGTGCTCTGTTGTCCCCTAATCCGGTTAGCCGTCGAGCCACCAGCCATCTGAGGCACCGGCAGTAGAGGACGAAGAAGGAATGGGTGGACGTGGAAAGGAAAGATGCGACGAGACTAGAGGAAAGGAGAGGAGAGCAAAATGGATGGGGGTTTTGGATGGGGAAAAAAACTTGCTTAACCCCtgctgagagagacagaataagaAAACAATaactgaaagaaagacagaaagaaagagagagagagagagaacgaggagACATTTTGTTTCACAGGGGTAGTGTTTCATGTTCAGATTTCAGttctcttaaataaaaaaataagatgaagCTCCTCCTGAAGAGTAAAGAGACATACACACTGAAATTGTTGGAATGAGGTAAACGCCAAAAATGATGAACTGAACTGTAGGTTGCTCTACCACGAGATACAatcaaaaacaatatatatattttgatctATCAAAATTGTAAAGTGAGCAACAAGCTGTGACCAgtaaaaagacacaaaaaaatctgtttttggaaAGTATTCTCTGAGTAGCTCAATATTCATGCTTTATCCCTCTTTCAGAGCTGTTGTTGTAAGTACTATAATCAAAGGCCCTTGAGAAACTGCATAGAGAATTTCTTTCTGCAGAGCCTTATGCAGTAATTACAAAAGAGGCATACTTTAGAGACTTTCTAGAGACTTTCTGTAGGCtaattatgtaatataatataattagataattatataacaataataatgctaatgcatTGAACTGACTatataagattatttttttaaccaaagaGTCTTAAGACCTTTAAAAGTATTTCACAGTTgcacatatttataatttttttttatgagattGTCCAATCCAGTCCACAATGAATCTACTTTTTCCAGTCTTCAGCTTTGTAGTTCTGCAAATCTTTCAGTGTGAAATTCCCAGCACTGTGTGAGAACGTGTGTTTGTCAATGGCCGGCCAAAGGGGCTCCATACGTGGCCTCCACACAATGCCATCTGCTCTCTGCCTCCATGCACCTCATGCAGTACAGACACAGCATAAGTCAAAAGCGCAATTAGTAGGGCCATCATCTCCCACCAGGGCTGCCAAGGGCCTTGACAAGGTTTCCTGCAGCCCAGCATTTGTTCCTGACCTGGGGAGAGAGCAGGAGCTGGAGATGCCTTGCTCAGCAGGCACATTCTCAGCAGTCTTTTTCACATTCTCCCCCCTTTTCTTATTAGCTCTGGTGGACAGTTCAAAGATTTGAGAGGCCACCTGTTGAGGCGATCATAGCACATCCTTTTTCAAAAATCATGTGTGCATGTTTAATTGCGCTTGCTGGTGTCATTTTGATGCATTTGTTATGTAATTGCATGTGCCAATCATGCATGAATGCAGATtgcagatatatatatttatatactgcaCATCTTTGCCATTGTGCAGTAATAACAGGTTAATATGTGAACAATTCCTCATTTAACTTTTGTGTGTGATTAGACAGACTGTTTGTGAATACCTTTGTTATGAGGTACAATAAAATCATTAACAAGTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651764.1 True 2020 lncRNA 0.41 2 13287852 13298774

Neighbor

gene id symbol gene type direction distance location
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding downstream 25356 13259303 ~ 13262496 (-)
LOC103033266 NA coding downstream 386456 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 759273 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 825099 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 871916 12408735 ~ 12415936 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding upstream 5642 13304416 ~ 13309323 (-)
LOC103034080 NA coding upstream 43047 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 51663 13350437 ~ 13356360 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 84038 13382812 ~ 13438173 (-)
fgfrl1 fgfrl1,LOC107730574 coding upstream 237715 13536489 ~ 13547597 (-)
LOC111195722 NA non-coding downstream 254724 13024268 ~ 13033128 (-)
LOC111195725 NA non-coding downstream 274852 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 281145 13006478 ~ 13006707 (-)
G204946 NA non-coding downstream 381840 12905194 ~ 12906012 (-)
G204933 NA non-coding downstream 461833 12823599 ~ 12826019 (-)
LOC111195723 NA non-coding upstream 21538 13320312 ~ 13322121 (-)
G205327 NA non-coding upstream 282470 13581244 ~ 13683903 (-)
G205332 NA non-coding upstream 296421 13595195 ~ 13598025 (-)
G205343 NA non-coding upstream 335950 13634724 ~ 13650827 (-)
G205345 NA non-coding upstream 339800 13638574 ~ 13643510 (-)
G204671 NA other downstream 1703778 11583200 ~ 11584074 (-)
G204584 NA other downstream 2643165 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3528785 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5544280 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6495861 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 434939 13733713 ~ 13739921 (-)
G205375 NA other upstream 445579 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 603429 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 643949 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 675903 13974677 ~ 13978450 (-)

Expression


Co-expression Network