G50978


Basic Information

Item Value
gene id G50978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 799627 ~ 799859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58048
TTTTAATCTCGCTCGGTTGTAAAAGCCCCATAGAGGAATTTTGCCGCTCTGAGATCCTACCCATTTCATTGGTCAGGTCAACCCTTAGGGGTGTGACTTCTCCCAGAGCTTAAAGCCAGCACGCAATGCTCCTCCCTCGCTCTTACTTTTCCGACAACACAGGGGCTGCCTGTGGGCCGGTAGGCCTTTGGGCCTGGGCCTGCCCTGCCCCTAACCATGTGCTTGACTAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58048 True 233 lncRNA 0.52 1 799627 799859

Neighbor

gene id symbol gene type direction distance location
CI01000009_00719164_00724772 SRPX coding upstream 74576 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 88822 704065 ~ 710805 (+)
CI01000009_00620687_00621072 NA coding upstream 178090 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 181865 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 190252 608513 ~ 609375 (+)
CI01000009_00805606_00808374 NA coding downstream 5045 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 51383 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 114136 913995 ~ 916565 (+)
CI01000009_00920570_00955979 TBC1D4 coding downstream 120569 920428 ~ 956574 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 234702 1034561 ~ 1035728 (+)
G50973 NA non-coding upstream 12137 786884 ~ 787490 (+)
G50921 NA non-coding upstream 23118 776284 ~ 776509 (+)
G50917 NA non-coding upstream 39354 757122 ~ 760273 (+)
G50913 NA non-coding upstream 43456 746194 ~ 756171 (+)
G50911 NA non-coding upstream 54449 742001 ~ 745178 (+)
G50984 NA non-coding downstream 38081 837940 ~ 840919 (+)
G50947 NA non-coding downstream 74243 874102 ~ 877421 (+)
G50954 NA non-coding downstream 78412 878271 ~ 881321 (+)
G51001 NA non-coding downstream 94796 894655 ~ 894871 (+)
G50933 NA non-coding downstream 105473 905332 ~ 908981 (+)
G50920 NA other upstream 29394 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 703840 94371 ~ 97230 (+)
CI01000009_01431700_01434463 NA other downstream 622988 1429873 ~ 1435328 (+)
G51122 NA other downstream 880287 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1094376 1897343 ~ 1919516 (+)
G51274 NA other downstream 1455240 2255099 ~ 2350486 (+)
G51529 NA other downstream 2262174 3062033 ~ 3062587 (+)

Expression


Co-expression Network