LOC111195755


Basic Information

Item Value
gene id LOC111195755
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25852905 ~ 25855561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651788.1
GCTCCTTTGCCATCTACTGGGCACTTGGAGATGTGCCACTTTAAAAAAGCAAGCAAACAAGTGTGTCAGGGGTTCTATGCTGTGTTTGAATGAGACACtgtggttatttttttatatataaaaattaatttgGGATGCATGAAATATTTGCCAACTGTAAATATCCGGACATCAAAACtattcagccaaaaatggcaaaaaacagTTTCTgtatatggcaaaaaaaaaaatacaataatttatactgaacaatGACAACTTTATTCTAGATCATATTGTAGTGTTTCCTCTAGGAATTCTCTCAGCAGTGGCTGCCCTTTACTGCATTCCCAGAGACAAAACTGAGCCAAAAAAGGTCACAGTTTCTAAAAATAGATAGAAAGGATCCCTATAGCCAGAAAGCAGTGTGAAGACTCAGCTCGTACTAGCTTTAGCCTAGCCGAGGCagactgctgtgtctgttagtatTAGCCTAGCCGAGGCagactgctgtgtctgttagctttAGCCTAGCCGAGGCAGACTGTTGTGTCTGTTAGCTTTAGCCTAGCCGAGTCagactgctgtgtctgttagctttATCCTAGCTGAGGCAGACTGTTGTGTCTGTTAGCTTTAGCCTAGCCGAGGCAAACTGCTGTGTTTGTTAGCATTAGTCAAGCCGAGGCAGACTGCTGtgtttgttagcattagccaagcCGAGGCagactgctgtgtctgttagctttAGCCTAGCCGAGGCAGACTGCTGtgtttgttagcattagccaagcCGAGGCagactgctgtgtctgttagctttAGCCTAGCCGAGGCagactgctgtgtctgttagtatTAGCCTAGCCGAGGCAGACTGCTGTGTTTGTTGGCATTAGCCAAGCTGAGGCAGACAGTCGTGTCTGTAAGCATTAGCCTAACCAAGGTAAACTGCTATGTCTGCATCCATTGTTCCAGATAAACAGCTCTTTGCAAGGTGCCAATGGAGCCAGAGATCTTAAGCAAAGAAGCTAAGAAGAGCAGGGCTAAAGTTTGCATGAAGTAAGACCAAGGATTAGAACCTAGAGCActgaaataagataaaataatctTCTCTAATGAGTCCAAATTTCAGCTCTGCCTAACACCTGCTCGTCTAATGGTTAGATGGAGATCTGGAGAGACGTACAAGCCACAGTGTCCCACACCCACTGTGAAAAATACTGGAGTATACTGTAGGTGATCATCTGGGGATGCTTCAACAAGGCTGTAATTGGGCAGATCAACCTTTGTGAAAGACGTATAAATcaagaaaaggcttcttctgctcTGGACATGTTGCCCAACTCTAAAagtttttttcacactgctaGCTCAATCAGGgtgattgaaaacctctggtcatacgccatcaaacaaagctggcATAAGGTCAGCCAAacgcagtgtgaaagactggtggagagcgtACCAAGACACATGAAACTGAACTCATTAGTATTAGTATCactattgttgtttctaaattgatatgaaatagttttctttgtattatatGTGGTccaaagctctgcatctttttactattctgcaaataaatgctctaaatgttttaatttggaatttgcgaGAATTGTTGATAGTagttcataaaataaaacaacaaagttaattttattcaagcatatacctatggcaaaatcagagaatctgatcatgttgatttttttcttaactGTATGTTTGCAACCCTTAAGACTGATATGTCTGTTAGAAAACCTTGCACTAGTGAATAcggaattaaatatttaaaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651788.1 True 1796 lncRNA 0.41 2 25852905 25855561

Neighbor

gene id symbol gene type direction distance location
LOC103040521 NA coding downstream 167294 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 280634 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 400814 25412186 ~ 25452091 (-)
ccdc113 NA coding downstream 575145 25270141 ~ 25277760 (-)
drc7 NA coding downstream 621894 25212565 ~ 25231011 (-)
LOC111195867 NA coding upstream 236609 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 241244 26096805 ~ 26099827 (-)
LOC111195836 NA coding upstream 388687 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 758301 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 818045 26673606 ~ 26715253 (-)
G207924 gins3,LOC107707437,LOC107714024,LOC107573213,LOC107589181 non-coding downstream 270593 25576068 ~ 25582312 (-)
G207938 NA non-coding downstream 295538 25554247 ~ 25557367 (-)
G207934 NA non-coding downstream 385810 25464541 ~ 25467095 (-)
G207928 NA non-coding downstream 410750 25438049 ~ 25442155 (-)
G207926 NA non-coding downstream 422582 25430004 ~ 25430323 (-)
G207964 NA non-coding upstream 37579 25893140 ~ 25894477 (-)
G207965 NA non-coding upstream 48346 25903907 ~ 25917560 (-)
G208008 NA non-coding upstream 151659 26007220 ~ 26013616 (-)
G208011 NA non-coding upstream 159186 26014747 ~ 26015003 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding upstream 205750 26061311 ~ 26076646 (-)
G207940 NA other downstream 119601 25592631 ~ 25733304 (-)
G207903 NA other downstream 500231 25317002 ~ 25352674 (-)
usb1 NA other downstream 592738 25251235 ~ 25260167 (-)
G207772 NA other downstream 904054 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 1323838 24524734 ~ 24529067 (-)
LOC111195756 NA other upstream 63659 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 133877 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 224203 26079764 ~ 26086504 (-)
LOC111195761 NA other upstream 231090 26086651 ~ 26088415 (-)
LOC111195835 NA other upstream 247926 26103487 ~ 26117632 (-)

Expression


Co-expression Network