LOC111195779


Basic Information

Item Value
gene id LOC111195779
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32700061 ~ 32701470 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651803.1
CCCTTTGAAAGCATTGGGAAAAGACTGGCTGAGGGCAACAAAAACATACCATCTGCTATTGTAAAAGTTGAAGAATTGAGTGCTGAACTACAGGAAGTGGAGAAAGTCCTTAATGAACACTTTGAGACCTATAACAAGGTCACACACACGCTTGGGCCCAGTGTCAGCCATGTGGTGTTCAGTTTGATAAAACAGTGCCTAACTGCAAAAATGACTGCTCTAGAAGAGATGAACAGCTGCTGATCAgcttagttgtttttttttgtacatatgcACATTGTTCAAATtgcacattgtttaaaaaaaaaaaaaaaaaaTTTGTGTTATCTGGCAGTTCTTGCTTAGCAAACTGAAGAGTCAATTCTGTGATTGGATAGCTTTTATGCCCAGTGGGTTGTAATACAAACGTTTGTAGTACAAACGTTCTGGATGCAAATTTATCTGTAGTAGGCCAGTGTAGCTGCTGGTTTCTGTTCAGTTCACTTCTTTTAATTAGCTAGGGGGAGTACCACAAATCAGGTTTTGTCCAGTTCCTTTCTAGGTCTCAGTACTTGCTAGATTTTCATTGGCATTGCACTTGTCATgtaattctgtttttatctttctaggtttttcttttataatttttttttatcatttgctCTGGCAGTATCTCAACTGGAGTTTATGGCCTATTTGTACTTGACATTCATTTGTGCTAGTGACAGAACACTAAGCATTTTTGTATAAGTTGCTCTAAATAAGAACAGCTGCTTAATgctgtaaaatttaaaattataaatactcTTGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651803.1 True 793 lncRNA 0.36 3 32700061 32701470

Neighbor

gene id symbol gene type direction distance location
LOC111195776 NA coding downstream 73485 32614920 ~ 32626576 (-)
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding downstream 90153 32602209 ~ 32609908 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 99050 32592697 ~ 32601011 (-)
LOC103044229 LOC103044229,LOC108430909 coding downstream 583497 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 1317539 31290134 ~ 31382522 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 1098632 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 1139517 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 1151599 33853069 ~ 33854406 (-)
pdgfc pdgfc coding upstream 1207639 33909109 ~ 34001611 (-)
fam198b fam198b coding upstream 1510095 34211565 ~ 34220540 (-)
G209329 NA non-coding downstream 954067 31745585 ~ 31745994 (-)
G209304 NA non-coding downstream 1180785 31519032 ~ 31519276 (-)
G209301 NA non-coding downstream 1183864 31515959 ~ 31516197 (-)
G209261 NA non-coding downstream 1414701 31285152 ~ 31285360 (-)
G209254 NA non-coding downstream 1427713 31271836 ~ 31272348 (-)
LOC111195778 NA non-coding upstream 1978 32703448 ~ 32704069 (-)
G209406 NA non-coding upstream 103829 32805299 ~ 32807680 (-)
G209433 NA non-coding upstream 127392 32828862 ~ 32829063 (-)
G209440 NA non-coding upstream 184220 32885690 ~ 32886052 (-)
G209452 NA non-coding upstream 251557 32953027 ~ 32953517 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 60132 32629294 ~ 32639929 (-)
G209303 NA other downstream 1182169 31517433 ~ 31517892 (-)
G209256 NA other downstream 1425659 31273868 ~ 31274402 (-)
G209224 NA other downstream 1600200 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 1896705 30513907 ~ 30803356 (-)
G209458 NA other upstream 254145 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 900629 33602099 ~ 33604989 (-)
G209640 NA other upstream 1469297 34170767 ~ 34212849 (-)
G209660 NA other upstream 1533448 34234918 ~ 34274593 (-)
egf NA other upstream 1918991 34620461 ~ 34656484 (-)

Expression


Co-expression Network